Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 5.3e-87 324.3 163 100.0
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 6.9e-87 323.9 162 100.0
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.4e-68 263.1 156 79.5
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 2.1e-67 259.2 147 85.0
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 6.1e-67 257.7 153 78.4
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 6.1e-67 257.7 153 78.4
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.4e-66 256.5 153 78.4
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 2.3e-66 255.8 160 78.1
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 3.9e-66 255.0 152 77.0
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 1.1e-65 253.4 135 85.9
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 2.0e-65 252.7 153 75.2
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 2.0e-65 252.7 149 78.5
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 3.3e-65 251.9 151 76.2
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 3.3e-65 251.9 152 78.3
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 4.3e-65 251.5 139 82.7
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 5.7e-65 251.1 155 75.5
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 5.7e-65 251.1 160 76.2
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 5.7e-65 251.1 147 78.9
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 5.7e-65 251.1 154 74.7
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 9.7e-65 250.4 152 77.0
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 1.3e-64 250.0 160 71.2
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 1.3e-64 250.0 152 74.3
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 1.3e-64 250.0 152 78.3
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 1.3e-64 250.0 152 77.0
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 1.7e-64 249.6 147 77.6
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 1.7e-64 249.6 153 77.8
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 1.7e-64 249.6 155 74.8
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 2.2e-64 249.2 152 77.6
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 2.2e-64 249.2 153 75.8
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 2.2e-64 249.2 144 80.6
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 2.8e-64 248.8 134 83.6
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 3.7e-64 248.4 149 77.9
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 3.7e-64 248.4 136 83.1
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 3.7e-64 248.4 156 74.4
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 3.7e-64 248.4 139 82.0
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 4.8e-64 248.1 154 75.3
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 4.8e-64 248.1 149 75.8
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 4.8e-64 248.1 153 75.8
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 4.8e-64 248.1 154 75.3
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.3e-64 247.7 162 73.5
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 8.2e-64 247.3 152 74.3
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 8.2e-64 247.3 153 75.2
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 8.2e-64 247.3 150 77.3
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.1e-63 246.9 150 74.7
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 1.4e-63 246.5 155 72.9
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 1.4e-63 246.5 155 72.9
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 1.4e-63 246.5 132 84.8
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 1.4e-63 246.5 149 75.2
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 1.8e-63 246.1 150 76.0
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.8e-63 246.1 152 78.3
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 2.4e-63 245.7 151 78.8
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 3.1e-63 245.4 156 75.0
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 3.1e-63 245.4 152 77.6
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 4.1e-63 245.0 152 73.0
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 4.1e-63 245.0 159 78.6
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 5.3e-63 244.6 137 79.6
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 5.3e-63 244.6 137 79.6
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 5.3e-63 244.6 137 79.6
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 5.3e-63 244.6 137 79.6
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 5.3e-63 244.6 137 79.6
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 5.3e-63 244.6 152 75.0
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 5.3e-63 244.6 152 76.3
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 9.1e-63 243.8 154 74.0
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 1.5e-62 243.0 137 78.8
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 1.5e-62 243.0 153 75.2
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 1.5e-62 243.0 134 80.6
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 3.4e-62 241.9 152 74.3
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 3.4e-62 241.9 136 80.9
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 4.5e-62 241.5 152 73.7
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 1.7e-61 239.6 155 70.3
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.7e-61 239.6 136 79.4
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.7e-61 239.6 163 69.9
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 1.7e-61 239.6 155 72.3
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.9e-61 238.8 160 69.4
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 5.0e-61 238.0 160 68.1
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 5.0e-61 238.0 153 74.5
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 6.5e-61 237.7 150 72.7
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 6.5e-61 237.7 160 68.8
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 6.5e-61 237.7 137 78.8
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 1.4e-60 236.5 157 69.4
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 1.4e-60 236.5 160 68.1
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 1.4e-60 236.5 156 70.5
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 3.2e-60 235.3 153 71.2
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 3.2e-60 235.3 153 71.2
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 4.2e-60 235.0 153 73.9
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 4.2e-60 235.0 152 73.0
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 5.5e-60 234.6 151 74.2
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 5.5e-60 234.6 153 71.2
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 7.2e-60 234.2 154 69.5
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 9.4e-60 233.8 153 70.6
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 1.2e-59 233.4 152 73.0
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.1e-59 232.6 149 73.8
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.1e-59 232.6 156 71.8
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 2.7e-59 232.3 149 73.2
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 4.7e-59 231.5 137 76.6
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 7.9e-59 230.7 152 70.4
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 1.8e-58 229.6 153 70.6
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 1.8e-58 229.6 144 71.5
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.3e-58 229.2 153 70.6
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 8.8e-58 227.3 153 68.6
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 5.7e-57 224.6 153 67.3
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 9.7e-57 223.8 148 70.3
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 1.3e-56 223.4 152 67.1
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 3.7e-56 221.9 172 62.8
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 1.8e-55 219.5 147 68.7
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 3.1e-55 218.8 150 68.0
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 1.2e-54 216.9 127 75.6
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.9e-52 209.5 203 54.7
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 1.9e-52 209.5 116 82.8
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.2e-52 208.4 196 56.1
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 7.2e-52 207.6 201 54.2
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 7.2e-52 207.6 131 71.8
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 5.3e-47 191.4 147 60.5
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.3e-45 186.8 157 61.8
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.5e-44 183.3 97 86.6
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.5e-44 182.6 102 80.4
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 6.1e-43 177.9 137 62.0
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 7.5e-41 171.0 130 57.7
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.4e-34 150.2 82 82.9
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.3e-24 117.1 73 74.0
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 8.3e-24 114.4 83 63.9
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 8.3e-16 87.8 82 51.2
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.6e-14 83.6 148 35.1
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 9.5e-12 74.3 130 33.1
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 6.0e-06 55.1 49 57.1


User provided reference genes

Program Settings