Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00256 Eucalyptus grandis HOM05D005615 ORTHO05D007558 6.4e-263 910.2 462 100.0
Eucgr.A00054 Eucalyptus grandis HOM05D005615 ORTHO05D007558 2.3e-252 875.2 450 98.9
PGR083G0205 Punica granatum HOM05D005615 ORTHO05D007558 9.7e-187 657.1 396 84.6
Dinv22646 Davidia involucrata HOM05D005615 ORTHO05D007558 5.9e-184 647.9 396 83.6
Thecc.05G003200 Theobroma cacao HOM05D005615 ORTHO05D007558 1.3e-183 646.7 354 89.8
MD04G1037300 Malus domestica HOM05D005615 ORTHO05D007558 2.9e-183 645.6 397 82.6
QL10p047743 Quercus lobata HOM05D005615 ORTHO05D007558 8.5e-183 644.0 358 89.4
Actinidia34618 Actinidia chinensis HOM05D005615 ORTHO05D007558 1.5e-182 643.3 354 89.8
Manes.04G040500 Manihot esculenta HOM05D005615 ORTHO05D007558 1.9e-182 642.9 397 83.1
Atru.chr3.1563 Acer truncatum HOM05D005615 ORTHO05D007558 3.2e-182 642.1 354 88.7
Atru.chr3.1585 Acer truncatum HOM05D005615 ORTHO05D007558 3.2e-182 642.1 354 88.7
Rhsim09G0030100 Rhododendron simsii HOM05D005615 ORTHO05D007558 5.5e-182 641.3 396 83.6
Dinv44241 Davidia involucrata HOM05D005615 ORTHO05D007558 7.2e-182 641.0 384 84.9
Duzib093G1513 Durio zibethinus HOM05D005615 ORTHO05D007558 9.4e-182 640.6 354 89.0
GSVIVG01010734001 Vitis vinifera HOM05D005615 ORTHO05D007558 2.7e-181 639.0 354 88.7
TAR362G0587 Trochodendron aralioides HOM05D005615 ORTHO05D007558 2.3e-180 636.0 354 88.7
Haze_00733 Corylus avellana HOM05D005615 ORTHO05D007558 6.8e-180 634.4 362 87.3
Potri.017G033300 Populus trichocarpa HOM05D005615 ORTHO05D007558 8.8e-180 634.0 396 80.3
Ciclev10020553m.g Citrus clementina HOM05D005615 ORTHO05D007558 4.4e-179 631.7 396 81.3
Cfa015769 Carpinus fangiana HOM05D005615 ORTHO05D007558 5.7e-179 631.3 357 87.1
FAN17G1451 Fragaria x ananassa HOM05D005615 ORTHO05D007558 7.5e-179 630.9 397 80.4
Sabra07G0102500 Salix brachista HOM05D005615 ORTHO05D007558 1.3e-178 630.2 398 80.7
ClCG08G004320 Citrullus lanatus HOM05D005615 ORTHO05D007558 1.7e-178 629.8 394 81.5
RcHm_v2.0_Chr4g0408131 Rosa chinensis HOM05D005615 ORTHO05D007558 2.2e-178 629.4 352 85.8
Oeu018049.1 Olea europaea HOM05D005615 ORTHO05D007558 3.7e-178 628.6 359 86.9
CiPaw.02G056100 Carya illinoinensis HOM05D005615 ORTHO05D007558 6.3e-178 627.9 392 81.9
Lj3g0021315 Lotus japonicus HOM05D005615 ORTHO05D007558 6.3e-178 627.9 394 81.0
Aa31LG1G25060 Aethionema arabicum HOM05D005615 ORTHO05D007558 1.1e-177 627.1 395 81.3
Sed0015751 Sechium edule HOM05D005615 ORTHO05D007558 1.1e-177 627.1 394 80.2
CsaV3_6G003770 Cucumis sativus L. HOM05D005615 ORTHO05D007558 1.4e-177 626.7 394 81.2
Lalb_Chr01g0001081 Lupinus albus HOM05D005615 ORTHO05D007558 1.4e-177 626.7 355 87.3
Phvul.011G023300 Phaseolus vulgaris HOM05D005615 ORTHO05D007558 1.4e-177 626.7 354 87.6
AT2G43360 Arabidopsis thaliana HOM05D005615 ORTHO05D007558 1.8e-177 626.3 394 79.9
TWI36G1239 Tripterygium wilfordii HOM05D005615 ORTHO05D007558 2.4e-177 625.9 359 85.5
AL4G42040 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 4.1e-177 625.2 394 79.9
Potri.007G126400 Populus trichocarpa HOM05D005615 ORTHO05D007558 4.1e-177 625.2 396 80.8
CANSAT78G0163 Cannabis sativa HOM05D005615 ORTHO05D007558 9.1e-177 624.0 397 80.9
CARHR138440 Cardamine hirsuta HOM05D005615 ORTHO05D007558 1.2e-176 623.6 394 79.7
A05p03730 Brassica napus HOM05D005615 ORTHO05D007558 1.6e-176 623.2 394 80.2
VMungo1127G1033 Vigna mungo HOM05D005615 ORTHO05D007558 1.6e-176 623.2 352 86.9
Aqoxy2G04109 Aquilegia oxysepala HOM05D005615 ORTHO05D007558 2.0e-176 622.9 363 84.6
Gohir.D01G221300 Gossypium hirsutum HOM05D005615 ORTHO05D007558 2.0e-176 622.9 359 86.4
Gorai.002G267900 Gossypium raimondii HOM05D005615 ORTHO05D007558 2.0e-176 622.9 359 86.4
Sabra17G0020900 Salix brachista HOM05D005615 ORTHO05D007558 2.0e-176 622.9 396 78.8
Glyma.12G020600 Glycine max HOM05D005615 ORTHO05D007558 2.7e-176 622.5 354 86.2
Cc03_g13240 Coffea canephora HOM05D005615 ORTHO05D007558 3.5e-176 622.1 368 84.2
Nn7g37651 Nelumbo nucifera HOM05D005615 ORTHO05D007558 4.5e-176 621.7 363 86.0
BraA05t19360Z Brassica rapa HOM05D005615 ORTHO05D007558 5.9e-176 621.3 394 79.7
Glyma.11G094200 Glycine max HOM05D005615 ORTHO05D007558 5.9e-176 621.3 355 86.2
Medtr4g076870 Medicago truncatula HOM05D005615 ORTHO05D007558 5.9e-176 621.3 382 81.9
C04p04420 Brassica napus HOM05D005615 ORTHO05D007558 7.7e-176 620.9 394 79.7
A03p24210 Brassica napus HOM05D005615 ORTHO05D007558 1.0e-175 620.5 394 79.4
BraA03t11630Z Brassica rapa HOM05D005615 ORTHO05D007558 1.0e-175 620.5 394 79.4
Carub.0004s2582 Capsella rubella HOM05D005615 ORTHO05D007558 1.0e-175 620.5 394 78.9
BcaB01g03390 Brassica carinata HOM05D005615 ORTHO05D007558 1.3e-175 620.2 394 78.7
BcaC02g12407 Brassica carinata HOM05D005615 ORTHO05D007558 1.3e-175 620.2 394 79.7
Lalb_Chr03g0024511 Lupinus albus HOM05D005615 ORTHO05D007558 1.7e-175 619.8 394 80.2
BolC4t22075H Brassica oleracea HOM05D005615 ORTHO05D007558 2.9e-175 619.0 393 78.9
arahy.Tifrunner.gnm1.ann1.2A1XYJ Arachis hypogaea HOM05D005615 ORTHO05D007558 5.0e-175 618.2 355 85.6
Sp4g25460 Schrenkiella parvula HOM05D005615 ORTHO05D007558 8.5e-175 617.5 395 79.2
PSO675G8272 Papaver somniferum HOM05D005615 ORTHO05D007558 1.1e-174 617.1 357 85.2
THA.LOC104803617 Tarenaya hassleriana HOM05D005615 ORTHO05D007558 1.9e-174 616.3 382 81.2
Migut.N03069 Erythranthe guttata HOM05D005615 ORTHO05D007558 3.2e-174 615.5 354 86.7
Gohir.A01G231200 Gossypium hirsutum HOM05D005615 ORTHO05D007558 5.5e-174 614.8 356 86.5
Ca_26061_v3 Cicer arietinum L. HOM05D005615 ORTHO05D007558 7.2e-174 614.4 388 80.7
PSO017G2630 Papaver somniferum HOM05D005615 ORTHO05D007558 9.4e-174 614.0 355 84.8
ECA238G2991 Erigeron canadensis HOM05D005615 ORTHO05D007558 1.6e-173 613.2 396 79.3
HanXRQChr14g0434901 Helianthus annuus HOM05D005615 ORTHO05D007558 1.6e-173 613.2 351 86.3
Sc13g0007050 Simmondsia chinensis HOM05D005615 ORTHO05D007558 1.6e-173 613.2 354 84.5
MSTRG.22029 Avicennia marina HOM05D005615 ORTHO05D007558 2.1e-173 612.8 334 90.1
Lsat_1_v5_gn_2_52041 Lactuca sativa HOM05D005615 ORTHO05D007558 2.7e-173 612.5 354 84.7
Thhalv10001495m.g Eutrema salsugineum HOM05D005615 ORTHO05D007558 3.6e-173 612.1 395 78.2
SGA_v2.0_scaffold283G46961 Striga asiatica HOM05D005615 ORTHO05D007558 3.6e-173 612.1 351 85.8
Hund03143 Selenicereus undatus HOM05D005615 ORTHO05D007558 8.0e-173 610.9 351 85.5
TPR.G13757 Trifolium pratense HOM05D005615 ORTHO05D007558 1.8e-172 609.8 382 80.4
Os08g0540100 Oryza sativa ssp. japonica HOM05D005615 ORTHO05D007558 5.2e-172 608.2 394 78.7
Solyc06g073470.3 Solanum lycopersicum HOM05D005615 ORTHO05D007558 5.2e-172 608.2 335 87.5
Sopen06g029830 Solanum pennellii HOM05D005615 ORTHO05D007558 5.2e-172 608.2 335 87.5
PGSC0003DMG400026904 Solanum tuberosum HOM05D005615 ORTHO05D007558 6.8e-172 607.8 335 87.2
Psat7g172600 Pisum sativum HOM05D005615 ORTHO05D007558 8.8e-172 607.4 382 79.3
ATR0743G064 Amborella trichopoda HOM05D005615 ORTHO05D007558 1.2e-171 607.1 375 80.0
MELO3C011628.2 Cucumis melo HOM05D005615 ORTHO05D007558 1.2e-171 607.1 423 74.9
Nitab4.5_0002368g0110 Nicotiana tabacum HOM05D005615 ORTHO05D007558 2.6e-171 605.9 393 78.6
Nitab4.5_0010690g0020 Nicotiana tabacum HOM05D005615 ORTHO05D007558 2.6e-171 605.9 395 78.2
unitig_736.g22473 Utricularia gibba HOM05D005615 ORTHO05D007558 7.5e-171 604.4 351 84.3
EL10Ac3g05574 Beta vulgaris HOM05D005615 ORTHO05D007558 2.8e-170 602.4 359 83.0
AUR62034151 Chenopodium quinoa HOM05D005615 ORTHO05D007558 3.1e-169 599.0 357 83.8
AUR62016250 Chenopodium quinoa HOM05D005615 ORTHO05D007558 5.4e-169 598.2 354 83.9
Zm00001eb037230 Zea mays HOM05D005615 ORTHO05D007558 2.3e-167 592.8 362 81.2
CDE07G0588 Ceratophyllum demersum HOM05D005615 ORTHO05D007558 2.9e-167 592.4 331 87.9
DCAR_029917 Daucus carota HOM05D005615 ORTHO05D007558 2.9e-167 592.4 336 84.5
arahy.Tifrunner.gnm1.ann1.VQKS2I Arachis hypogaea HOM05D005615 ORTHO05D007558 3.8e-167 592.0 355 83.4
SEGI_32939 Sequoiadendron giganteum HOM05D005615 ORTHO05D007558 6.6e-167 591.3 358 81.3
Mapoly0041s0099 Marchantia polymorpha HOM05D005615 ORTHO05D007558 1.8e-164 583.2 355 81.4
MBI11_g35028_MAGBIO Magnolia biondii HOM05D005615 ORTHO05D007558 1.4e-161 573.5 354 82.5
Ciclev10024495m.g Citrus clementina HOM05D005615 ORTHO05D007558 3.2e-161 572.4 396 75.5
Pp3c11_17440 Physcomitrium patens HOM05D005615 ORTHO05D007558 2.3e-159 566.2 352 79.3
Pp3c1_16250 Physcomitrium patens HOM05D005615 ORTHO05D007558 6.6e-159 564.7 348 80.2
Lj6A60G37 Lonicera japonica HOM05D005615 ORTHO05D007558 3.3e-158 562.4 319 88.4
SMO358G0150 Selaginella moellendorffii HOM05D005615 ORTHO05D007558 4.7e-157 558.5 352 78.1
SGA_v2.0_scaffold12G06187 Striga asiatica HOM05D005615 ORTHO05D007558 2.3e-156 556.2 369 76.7
BcaC01g05236 Brassica carinata HOM05D005615 ORTHO05D007558 3.5e-152 542.3 398 71.9
BolC3t15243H Brassica oleracea HOM05D005615 ORTHO05D007558 1.1e-150 537.3 397 70.8
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 5.4e-145 518.5 336 74.7
AagrBONN_evm.TU.Sc2ySwM_344.4725 Anthoceros agrestis HOM05D005615 ORTHO05D007558 5.6e-142 508.4 397 64.5
Ciclev10024062m.g Citrus clementina HOM05D005615 ORTHO05D007558 1.5e-139 500.4 354 74.0
Prupe.1G186700 Prunus persica HOM05D005615 ORTHO05D007558 2.6e-131 473.0 267 88.4
Cpa.g.sc71.17 Carica papaya HOM05D005615 ORTHO05D007558 4.6e-128 462.2 293 79.2
FvH4_4g11460 Fragaria vesca HOM05D005615 ORTHO05D007558 3.0e-127 459.5 294 79.3
HPP92_002777 Vanilla planifolia HOM05D005615 ORTHO05D007558 1.3e-122 444.1 252 84.5
CAN.G65.188 Capsicum annuum HOM05D005615 ORTHO05D007558 1.9e-121 440.3 247 87.0
HPP92_028241 Vanilla planifolia HOM05D005615 ORTHO05D001525 3.1e-116 422.9 303 71.9
COL.COLO4_14419 Corchorus olitorius HOM05D005615 ORTHO05D007558 1.1e-108 397.9 217 90.8
Cre06.g261150 Chlamydomonas reinhardtii HOM05D005615 ORTHO05D007558 8.4e-106 388.3 335 58.8
MCO13G117 Micromonas commoda HOM05D005615 ORTHO05D007558 8.4e-106 388.3 314 61.8
Zm00001eb198320 Zea mays HOM05D005615 ORTHO05D007558 1.0e-98 364.8 200 89.0
FAN07G1681 Fragaria x ananassa HOM05D005615 ORTHO05D007558 3.8e-98 362.8 201 83.1
Peaxi162Scf00375g00079 Petunia axillaris HOM05D005615 ORTHO05D007558 1.1e-97 361.3 225 80.4
Haze_27367 Corylus avellana HOM05D005615 ORTHO05D007558 2.2e-77 293.9 299 49.5
vmacro00603 Vaccinium macrocarpon HOM05D005615 ORTHO05D007558 2.6e-75 287.0 234 64.1
AL3G36550 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 2.8e-56 223.8 121 88.4
CBR_g54828 Chara braunii HOM05D005615 ORTHO05D007558 4.5e-51 206.5 134 68.7
AL4G42060 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 1.0e-50 205.3 209 56.0
Actinidia27060 Actinidia chinensis HOM05D005615 ORTHO05D007558 8.3e-45 185.7 97 90.7
CBR_g54834 Chara braunii HOM05D005615 ORTHO05D007558 8.6e-42 175.6 104 81.7
Cpa.g.sc71.16 Carica papaya HOM05D005615 ORTHO05D007558 1.5e-33 148.3 100 80.0
CBR_g54836 Chara braunii HOM05D005615 ORTHO05D000002 8.1e-32 142.5 101 72.3
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 3.2e-28 130.6 78 82.1
HPP92_002776 Vanilla planifolia HOM05D005615 ORTHO05D007558 7.1e-28 129.4 80 82.5
Eucgr.A00259 Eucalyptus grandis HOM05D005615 ORTHO05D007558 2.7e-27 127.5 74 83.8
CDE04G1318 Ceratophyllum demersum HOM05D005615 ORTHO05D007558 4.7e-24 116.7 71 80.3
Cpa.g.c45785 Carica papaya HOM05D005615 ORTHO05D007558 1.8e-23 114.8 60 86.7
SalBow8G4084 Salvia bowleyana HOM05D005615 ORTHO05D007558 1.4e-20 105.1 68 76.5
Zm00001eb285620 Zea mays HOM05D001443 ORTHO05D001352 7.1e-20 102.8 126 50.8


User provided reference genes

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