Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 0.0e+00 1281.9 654 100.0
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 5.7e-132 475.7 618 47.7
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.7e-120 437.6 631 45.8
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.1e-119 434.9 626 47.0
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 2.7e-118 430.3 576 47.6
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.3e-117 427.2 636 45.0
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 9.7e-116 421.8 537 48.8
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 7.0e-114 415.6 494 50.2
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 7.0e-114 415.6 499 50.5
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 9.1e-114 415.2 572 46.5
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 5.0e-112 409.5 644 45.0
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.9e-111 407.5 583 46.7
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.2e-110 404.8 508 48.8
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.6e-110 404.4 522 47.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.6e-110 404.4 583 46.5
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.8e-109 401.0 584 46.6
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 2.6e-108 397.1 534 47.8
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 3.7e-107 393.3 498 48.8
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 4.8e-107 392.9 554 45.3
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.8e-107 392.9 634 42.7
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.4e-106 391.3 654 41.3
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.9e-104 383.6 496 48.2
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 6.5e-104 382.5 494 48.4
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 2.1e-102 377.5 540 45.7
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 2.8e-102 377.1 565 43.7
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 2.0e-100 370.9 410 54.6
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 4.9e-99 366.3 526 44.9
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.1e-98 365.2 603 41.5
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 2.4e-98 364.0 842 35.7
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 7.8e-97 359.0 440 48.0
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.3e-96 357.5 526 43.9
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 3.3e-95 353.6 498 46.2
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 5.6e-95 352.8 591 43.0
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.8e-93 347.8 406 49.5
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 2.3e-93 347.4 450 48.9
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 6.4e-91 339.3 407 50.9
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 6.4e-91 339.3 485 44.5
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 1.4e-90 338.2 432 48.4
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 2.4e-90 337.4 442 47.5
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 2.4e-90 337.4 442 47.5
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 2.4e-90 337.4 442 47.5
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 4.1e-90 336.7 473 44.8
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 5.4e-90 336.3 402 50.2
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 9.2e-90 335.5 416 48.6
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.6e-89 334.7 577 40.7
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 2.7e-89 334.0 421 48.7
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.3e-88 331.6 313 57.2
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.7e-88 331.3 490 43.9
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 6.6e-88 329.3 470 43.4
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 3.3e-87 327.0 459 44.9
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.3e-87 327.0 490 43.3
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 4.3e-87 326.6 489 43.4
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 4.3e-87 326.6 446 46.9
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 4.3e-87 326.6 399 48.9
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 7.3e-87 325.9 396 49.0
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 9.5e-87 325.5 619 38.9
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 9.5e-87 325.5 399 50.1
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 1.8e-85 321.2 324 55.2
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 6.8e-85 319.3 283 62.2
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 6.8e-85 319.3 434 45.6
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 8.9e-85 318.9 458 44.8
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 3.4e-84 317.0 318 54.7
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 4.4e-84 316.6 395 48.4
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 9.8e-84 315.5 489 41.7
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.7e-83 314.7 512 41.0
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 1.1e-82 312.0 493 43.8
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 4.1e-82 310.1 659 36.6
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 5.4e-82 309.7 562 39.3
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.1e-81 307.8 457 43.3
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.1e-79 302.0 461 42.1
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.1e-79 302.0 654 35.9
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.2e-78 298.5 425 46.6
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 5.2e-77 293.1 398 43.7
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.5e-76 291.6 300 55.3
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 7.5e-76 289.3 277 56.7
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.2e-75 287.7 386 43.5
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 3.7e-75 287.0 547 38.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 8.3e-75 285.8 506 39.1
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 1.9e-74 284.6 571 37.0
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 7.1e-74 282.7 454 40.5
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.2e-73 282.0 429 42.0
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.1e-73 281.2 386 44.0
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 3.5e-73 280.4 545 37.4
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 6.0e-73 279.6 349 48.4
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 4.3e-71 273.5 328 47.9
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 5.6e-71 273.1 420 42.9
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 1.2e-70 271.9 619 33.3
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.4e-69 268.5 651 34.9
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 2.4e-69 267.7 568 35.4
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 5.2e-69 266.5 631 34.7
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 3.4e-68 263.8 617 32.3
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 3.4e-68 263.8 626 32.1
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 7.6e-68 262.7 391 40.2
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.4e-66 258.5 433 40.9
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.9e-66 258.1 647 32.8
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.9e-66 258.1 622 33.6
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 9.2e-66 255.8 547 34.9
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 2.1e-65 254.6 247 55.5
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 2.7e-65 254.2 400 39.5
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 3.0e-64 250.8 384 40.9
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 5.1e-64 250.0 542 36.3
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 4.7e-62 243.4 255 55.7
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 7.1e-58 229.6 415 37.3
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 6.0e-57 226.5 406 36.2
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.7e-51 208.4 227 52.4
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 4.9e-51 206.8 294 41.2
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 5.4e-50 203.4 252 49.2
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 7.9e-49 199.5 312 42.0
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 3.3e-47 194.1 368 39.4
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.7e-46 190.7 256 44.1
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 9.0e-45 186.0 252 43.7
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 9.9e-44 182.6 344 38.7
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.3e-40 172.2 470 31.3
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 8.7e-40 169.5 369 31.4
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 6.2e-38 163.3 270 38.1
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.5e-36 158.7 442 31.2
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 2.0e-36 158.3 547 27.4
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 2.2e-35 154.8 268 38.8
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 5.5e-34 150.2 199 44.2
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 9.3e-34 149.4 183 48.6
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.8e-27 127.5 111 62.2
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 8.5e-27 126.3 249 38.2
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 3.6e-25 120.9 111 52.3
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.3e-21 107.1 254 35.0
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 2.6e-20 104.8 178 41.0
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.9e-19 101.3 96 54.2
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 8.5e-19 99.8 257 31.9
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 4.7e-17 94.0 325 28.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.5e-15 89.0 172 37.8
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.4e-13 82.4 235 30.2
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 9.1e-13 79.7 151 41.1
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 2.0e-12 78.6 153 40.5
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 5.0e-11 73.9 200 31.0
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 9.4e-10 69.7 117 38.5
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 1.6e-09 68.9 61 57.4
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 2.7e-09 68.2 52 57.7
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 2.7e-09 68.2 120 37.5
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 2.7e-09 68.2 291 28.2
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 6.1e-09 67.0 94 42.6
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 1.0e-08 66.2 76 47.4
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 1.4e-08 65.9 56 55.4
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.4e-08 65.9 53 62.3
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 2.3e-08 65.1 166 34.9
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.3e-08 65.1 302 28.8
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 5.2e-08 63.9 59 52.5
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 8.8e-08 63.2 234 30.3
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 5.7e-07 60.5 44 63.6
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 9.7e-07 59.7 72 40.3


User provided reference genes

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