Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 3.4e-144 515.0 266 100.0
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.1e-86 323.9 274 61.7
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 2.6e-83 312.8 267 62.9
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 4.6e-80 302.0 267 61.0
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.0e-79 300.8 272 62.9
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.0e-79 300.8 274 60.2
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.7e-79 300.1 267 60.7
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 3.9e-79 298.9 266 60.9
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 6.6e-79 298.1 271 60.1
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 2.5e-78 296.2 266 61.3
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 5.6e-78 295.0 272 58.8
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 7.3e-78 294.7 266 59.0
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 7.3e-78 294.7 266 59.0
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 2.8e-77 292.7 245 64.5
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 4.7e-77 292.0 266 58.6
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 6.2e-77 291.6 257 61.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.1e-76 290.8 267 59.9
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 1.4e-76 290.4 273 59.3
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 2.4e-76 289.7 270 61.1
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 2.4e-76 289.7 264 61.0
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 4.0e-76 288.9 277 57.8
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 4.0e-76 288.9 246 63.8
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.2e-75 287.3 262 62.6
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.5e-75 287.0 267 59.9
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 2.6e-75 286.2 272 60.3
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 3.4e-75 285.8 259 60.6
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 2.2e-74 283.1 270 58.9
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 8.4e-74 281.2 254 61.0
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.1e-73 280.8 260 60.4
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.9e-73 280.0 246 61.4
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 2.7e-72 276.2 252 60.3
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.7e-72 276.2 246 59.3
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.7e-72 276.2 246 59.3
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 7.8e-72 274.6 246 62.6
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.0e-71 274.2 265 57.7
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.3e-71 273.9 242 62.4
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.3e-71 273.1 275 57.5
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 6.6e-71 271.6 247 60.7
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 8.6e-71 271.2 274 57.3
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.5e-70 270.4 269 58.7
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 3.3e-70 269.2 268 57.1
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 3.3e-70 269.2 240 61.7
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 4.3e-70 268.9 242 62.8
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.2e-69 267.3 243 62.6
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.6e-69 266.9 276 54.0
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.6e-69 266.9 243 62.1
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 2.1e-69 266.5 268 55.6
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 2.1e-69 266.5 246 61.4
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 4.7e-69 265.4 256 57.0
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 6.2e-69 265.0 207 67.1
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.4e-68 263.8 271 55.4
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.4e-68 263.8 241 60.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 3.1e-68 262.7 270 55.9
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 6.9e-68 261.5 269 59.1
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 9.0e-68 261.2 248 58.5
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.5e-67 260.4 246 60.2
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.5e-67 260.4 246 60.2
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 7.6e-67 258.1 272 56.6
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 7.6e-67 258.1 241 59.8
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 7.6e-67 258.1 238 59.2
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 9.9e-67 257.7 229 62.9
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 6.4e-66 255.0 232 58.6
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 8.4e-66 254.6 262 55.7
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.1e-65 254.2 269 53.9
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.4e-65 253.8 232 58.6
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 2.4e-65 253.1 232 58.2
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 3.2e-65 252.7 246 57.7
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.2e-65 252.7 270 54.4
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 4.2e-65 252.3 240 58.8
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 5.4e-65 251.9 270 53.7
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 7.1e-65 251.5 242 58.3
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 9.3e-65 251.1 243 56.4
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.2e-64 250.8 251 55.8
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.6e-64 250.4 273 54.9
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 2.1e-64 250.0 242 57.4
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 2.1e-64 250.0 231 57.6
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 3.5e-64 249.2 243 53.9
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.5e-64 249.2 240 58.3
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 4.6e-64 248.8 254 54.7
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 4.6e-64 248.8 242 57.0
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.6e-64 248.8 270 53.7
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 6.0e-64 248.4 242 57.4
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 6.0e-64 248.4 247 55.9
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.3e-63 247.3 242 55.0
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.0e-63 246.1 242 57.0
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.0e-63 246.1 242 57.0
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 3.0e-63 246.1 243 55.6
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 3.9e-63 245.7 241 60.2
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 8.7e-63 244.6 242 56.6
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 8.7e-63 244.6 239 56.5
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.1e-62 244.2 243 57.2
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.5e-62 243.8 242 55.4
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.9e-62 243.4 258 53.9
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.9e-62 243.4 243 57.2
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 4.3e-62 242.3 243 55.1
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 5.6e-62 241.9 244 55.3
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 5.6e-62 241.9 227 56.8
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 7.3e-62 241.5 238 56.7
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 9.6e-62 241.1 250 54.0
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.6e-61 240.4 283 50.2
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 2.1e-61 240.0 240 55.4
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.6e-61 239.2 227 57.3
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 8.1e-61 238.0 243 56.8
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 1.5e-59 233.8 245 53.5
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 2.2e-58 229.9 241 52.7
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 2.4e-57 226.5 229 56.3
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 3.2e-57 226.1 262 50.4
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 1.8e-55 220.3 237 53.6
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 2.3e-55 219.9 271 50.2
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 8.7e-55 218.0 240 53.8
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.5e-54 217.2 226 55.3
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-53 213.8 237 54.0
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 6.9e-52 208.4 216 55.1
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 4.5e-51 205.7 242 48.3
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.2e-49 199.5 211 54.0
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 9.3e-49 198.0 212 53.3
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.3e-47 194.1 227 52.4
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.3e-46 189.5 257 43.6
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 2.4e-44 183.3 248 43.5
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 4.3e-38 162.5 242 43.4
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.8e-37 159.8 134 58.2
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.6e-32 144.1 216 39.4
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 3.6e-32 142.9 236 39.0
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 5.1e-31 139.0 177 47.5
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.3e-30 136.3 136 56.6
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.2e-29 133.7 110 57.3
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.8e-29 133.3 232 34.9
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 3.7e-29 132.9 217 37.8
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.1e-28 131.3 169 46.2
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 5.3e-28 129.0 231 35.1
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.5e-27 127.5 187 47.1
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.6e-27 126.7 233 33.9
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 4.5e-27 125.9 142 47.9
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.2e-26 123.6 269 38.7
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.6e-24 116.3 155 47.7
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 1.5e-22 110.9 236 34.3
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.3e-13 79.0 79 58.2
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 9.1e-12 75.1 209 31.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 1.6e-11 74.3 87 50.6
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.6e-11 74.3 87 50.6
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 2.7e-08 63.5 80 47.5
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 1.2e-06 58.2 49 65.3
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 7.5e-06 55.5 49 65.3
unitig_26.g9538 Utricularia gibba HOM05D000073 ORTHO05D000033 9.7e-06 55.1 191 30.9


User provided reference genes

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