Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 6.5e-164 580.9 339 100.0
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 3.6e-106 389.0 330 72.7
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 1.4e-97 360.5 318 70.1
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 6.4e-95 351.7 318 65.7
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 1.4e-94 350.5 324 65.7
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 1.4e-94 350.5 324 65.7
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 4.2e-94 349.0 328 67.7
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 9.3e-94 347.8 328 62.5
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 1.0e-92 344.4 317 68.1
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 1.0e-92 344.4 333 62.5
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 1.7e-92 343.6 333 65.5
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 3.9e-92 342.4 328 63.7
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 5.1e-92 342.0 330 57.6
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 5.6e-91 338.6 318 65.7
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 7.3e-91 338.2 333 61.6
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 7.3e-91 338.2 332 65.1
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 7.3e-91 338.2 316 65.8
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 1.3e-90 337.4 326 59.2
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 3.6e-90 335.9 317 65.6
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 1.4e-89 334.0 318 63.5
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 1.4e-89 334.0 338 61.2
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.4e-89 334.0 316 65.2
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 1.8e-89 333.6 345 60.6
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 4.0e-89 332.4 332 62.3
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 5.3e-89 332.0 326 63.8
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 6.9e-89 331.6 340 62.9
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.6e-88 329.7 203 80.3
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 3.4e-88 329.3 319 65.2
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 9.9e-88 327.8 318 65.1
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.3e-87 327.4 319 64.9
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 1.3e-87 327.4 339 61.7
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.7e-87 327.0 322 63.0
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 2.2e-87 326.6 323 65.3
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 3.8e-87 325.9 318 63.2
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 4.9e-87 325.5 331 62.5
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 4.9e-87 325.5 319 64.9
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 1.1e-86 324.3 316 64.9
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 1.4e-86 323.9 322 63.0
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.9e-86 323.6 206 78.6
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 5.4e-86 322.0 319 64.6
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 7.1e-86 321.6 318 61.3
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 7.1e-86 321.6 343 60.1
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 9.3e-86 321.2 318 65.7
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 1.2e-85 320.9 319 64.9
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 2.1e-85 320.1 321 63.2
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 7.9e-85 318.2 319 64.3
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 7.9e-85 318.2 326 62.6
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 2.3e-84 316.6 319 63.9
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 3.0e-84 316.2 361 52.9
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 3.9e-84 315.8 317 64.0
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 8.7e-84 314.7 319 63.6
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 8.7e-84 314.7 321 61.7
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 1.1e-83 314.3 316 64.6
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 1.9e-83 313.5 316 63.9
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 2.5e-83 313.2 323 61.9
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 5.6e-83 312.0 321 62.3
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 1.8e-81 307.0 347 54.5
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 4.0e-81 305.8 321 61.4
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.5e-80 303.9 322 61.5
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 3.4e-80 302.8 324 59.9
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 3.4e-80 302.8 324 59.9
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 4.5e-80 302.4 327 62.1
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 7.6e-80 301.6 330 60.9
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 9.9e-80 301.2 318 61.6
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 4.9e-79 298.9 357 53.2
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 6.4e-79 298.5 333 59.2
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 1.4e-78 297.4 329 59.6
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.4e-78 297.4 326 61.3
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 1.9e-78 297.0 317 61.2
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 4.2e-78 295.8 320 59.1
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 5.5e-78 295.4 317 61.2
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 7.1e-78 295.0 329 59.6
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.7e-77 293.1 317 58.7
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 4.6e-77 292.4 322 54.3
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 2.5e-75 286.6 324 56.5
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 5.6e-75 285.4 339 45.7
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 1.3e-74 284.3 331 56.2
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 6.2e-74 282.0 328 57.0
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 3.1e-73 279.6 319 51.1
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 6.9e-73 278.5 324 55.9
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 9.0e-73 278.1 296 63.2
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 2.0e-72 276.9 319 56.4
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 7.6e-72 275.0 322 58.7
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 1.7e-71 273.9 316 59.5
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 2.2e-71 273.5 332 56.9
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 2.2e-71 273.5 321 58.6
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 2.2e-71 273.5 321 58.6
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 3.8e-71 272.7 321 57.0
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 3.8e-71 272.7 316 53.8
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 6.5e-71 271.9 349 53.9
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 1.4e-70 270.8 316 59.2
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 2.5e-70 270.0 333 53.8
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 2.7e-69 266.5 324 57.7
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 6.5e-63 245.4 310 55.8
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.0e-60 238.0 324 52.8
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 3.9e-60 236.1 330 41.2
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 7.4e-59 231.9 173 61.8
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 2.8e-58 229.9 280 57.9
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 3.1e-57 226.5 165 62.4
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.4e-56 223.0 163 62.6
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 7.7e-56 221.9 170 60.6
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 6.5e-55 218.8 161 62.7
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 1.6e-53 214.2 318 45.0
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 2.1e-53 213.8 320 50.3
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.7e-53 213.4 115 93.9
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 3.6e-53 213.0 326 47.9
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 3.0e-52 209.9 172 58.7
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 2.8e-50 203.4 165 58.2
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 1.5e-48 197.6 257 41.2
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 1.7e-47 194.1 189 51.9
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 2.0e-43 180.6 167 53.3
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 8.2e-42 175.3 168 51.8
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.7e-37 160.2 181 47.0
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 6.1e-37 159.1 168 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 2.2e-31 140.6 247 50.6
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 3.7e-26 123.2 246 30.5
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.1e-25 121.7 170 40.6
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 5.4e-25 119.4 344 34.6
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 1.2e-21 108.2 253 48.2
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.1e-21 107.5 336 29.8
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 8.0e-21 105.5 99 52.5
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.7e-18 96.7 69 63.8
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 8.3e-18 95.5 78 56.4
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 1.3e-15 88.2 69 59.4
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 4.0e-12 76.6 64 57.8
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 2.0e-11 74.3 48 68.8
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 7.5e-11 72.4 64 53.1
SGA_v2.0_scaffold44G16637 Striga asiatica HOM05D005795 ORTHO05D007200 3.7e-10 70.1 156 35.3
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 3.2e-09 67.0 182 26.4
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 9.2e-09 65.5 128 33.6
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 3.5e-08 63.5 58 55.2
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 4.6e-08 63.2 54 53.7
SGA_v2.0_scaffold44G16633 Striga asiatica HOM05D056423 ORTHO05D406573 5.0e-07 59.7 142 32.4


User provided reference genes

Program Settings