Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.4e-130 469.5 227 100.0
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 6.6e-120 434.1 221 95.5
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.6e-86 323.2 206 78.6
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 1.1e-82 310.5 218 66.1
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 7.4e-79 297.7 218 63.3
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 2.8e-78 295.8 223 61.9
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.0e-77 292.0 218 62.8
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 1.8e-69 266.5 236 57.6
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 5.5e-66 255.0 214 57.9
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 7.9e-65 251.1 223 54.3
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.5e-63 246.1 214 56.1
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 1.3e-62 243.8 212 54.7
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 1.6e-62 243.4 206 59.7
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 2.8e-62 242.7 226 51.8
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 4.8e-62 241.9 217 52.5
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 4.8e-62 241.9 201 59.7
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.1e-61 240.7 202 57.9
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 9.0e-61 237.7 209 55.5
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 1.5e-60 236.9 210 56.7
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 3.4e-60 235.7 207 57.0
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 3.4e-60 235.7 205 56.1
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 7.7e-60 234.6 213 54.5
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.7e-59 233.4 205 56.1
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 3.8e-59 232.3 219 52.1
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 5.0e-59 231.9 174 62.1
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 6.5e-59 231.5 170 65.9
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 1.9e-58 229.9 172 62.8
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 2.5e-58 229.6 172 61.6
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 3.2e-58 229.2 220 50.9
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.2e-58 228.8 211 54.0
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 5.5e-58 228.4 209 55.5
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 5.5e-58 228.4 168 64.9
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 9.4e-58 227.6 208 54.8
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 2.7e-57 226.1 172 64.0
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 2.7e-57 226.1 172 61.6
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 3.6e-57 225.7 210 53.3
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 3.6e-57 225.7 217 51.6
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 7.9e-57 224.6 209 53.6
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 7.9e-57 224.6 171 62.6
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 7.9e-57 224.6 211 51.7
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 1.8e-56 223.4 172 61.6
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 3.0e-56 222.6 174 61.5
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 3.9e-56 222.2 205 54.1
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 8.8e-56 221.1 206 54.9
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 1.1e-55 220.7 218 51.4
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 3.3e-55 219.2 171 62.6
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 5.7e-55 218.4 171 60.8
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 2.2e-54 216.5 206 52.4
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 2.2e-54 216.5 218 50.0
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 2.8e-54 216.1 214 48.6
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 3.7e-54 215.7 171 59.6
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 4.8e-54 215.3 171 60.2
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 3.1e-53 212.6 203 51.7
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 2.0e-52 209.9 208 51.9
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 2.0e-52 209.9 205 51.7
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 2.6e-52 209.5 208 51.4
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 2.6e-52 209.5 209 50.7
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 4.5e-52 208.8 208 51.4
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 7.7e-52 208.0 179 58.7
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 1.7e-51 206.8 209 50.7
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 1.7e-51 206.8 208 50.5
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 3.8e-51 205.7 210 51.4
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 5.0e-51 205.3 174 56.3
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 2.5e-50 203.0 167 58.1
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 7.2e-50 201.4 208 50.5
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 7.2e-50 201.4 212 50.5
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 9.4e-50 201.1 243 44.0
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 1.6e-49 200.3 207 48.8
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 4.7e-49 198.7 175 57.7
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 4.7e-49 198.7 209 48.8
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 4.7e-49 198.7 208 50.0
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 6.1e-49 198.4 175 57.7
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 1.4e-48 197.2 168 56.5
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 1.8e-48 196.8 165 60.0
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 3.0e-48 196.1 202 49.0
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 2.0e-47 193.4 168 58.3
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 2.0e-47 193.4 165 56.4
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 2.0e-47 193.4 168 56.5
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 2.6e-47 193.0 169 56.8
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 9.7e-47 191.0 210 48.1
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 9.7e-47 191.0 210 48.1
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 8.2e-46 188.0 207 48.8
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 1.4e-45 187.2 209 47.8
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 1.4e-45 187.2 171 55.0
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.0e-44 183.3 203 45.8
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 3.5e-44 182.6 213 45.1
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 3.5e-44 182.6 207 46.9
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 5.0e-43 178.7 192 47.9
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 8.5e-43 177.9 211 44.5
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 8.5e-43 177.9 170 53.5
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 7.2e-42 174.9 207 44.9
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.3e-40 169.9 203 43.8
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 2.3e-40 169.9 165 50.9
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 2.3e-40 169.9 219 40.6
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 4.0e-40 169.1 173 49.1
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 5.2e-40 168.7 243 39.5
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 5.7e-39 165.2 206 45.1
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 1.3e-38 164.1 191 46.1
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 3.1e-37 159.5 212 41.0
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 4.1e-37 159.1 165 49.7
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 4.1e-37 159.1 165 49.7
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 9.1e-37 157.9 207 41.5
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 9.1e-37 157.9 207 41.5
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 2.0e-36 156.8 165 49.1
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 3.5e-36 156.0 207 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.0e-35 154.5 198 42.9
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 1.0e-35 154.5 169 46.2
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.3e-35 154.1 173 47.4
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 5.5e-34 148.7 165 48.5
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 5.2e-32 142.1 175 44.6
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 3.7e-30 136.0 212 35.8
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.7e-30 136.0 76 73.7
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 2.8e-22 109.8 172 36.6
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 1.8e-21 107.1 69 71.0
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 2.0e-20 103.6 213 31.5
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 2.3e-16 90.1 229 25.8
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 5.2e-16 89.0 111 36.0
SGA_v2.0_scaffold44G16637 Striga asiatica HOM05D005795 ORTHO05D007200 5.2e-16 89.0 192 32.3
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 1.8e-13 80.5 67 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 4.1e-13 79.3 133 35.3
SGA_v2.0_scaffold44G16633 Striga asiatica HOM05D056423 ORTHO05D406573 1.1e-10 71.2 259 25.5
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 1.4e-08 64.3 128 34.4
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 3.1e-08 63.2 105 37.1
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 5.2e-08 62.4 242 24.8
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.6e-07 60.1 120 26.7


User provided reference genes

Program Settings