Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 4.9e-233 810.8 430 100.0
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.0e-150 535.4 430 67.7
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 4.4e-149 531.9 429 66.4
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.7e-149 531.6 422 67.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 8.3e-148 527.7 426 68.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.1e-147 525.8 431 65.2
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.4e-147 525.0 431 65.9
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.7e-145 520.0 430 65.6
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.9e-145 519.2 422 65.4
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.9e-145 519.2 427 66.7
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.9e-145 518.8 422 65.4
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.6e-145 518.1 422 65.2
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.9e-144 516.5 420 67.1
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 2.5e-144 516.2 431 65.4
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 2.5e-144 516.2 431 65.4
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 5.6e-144 515.0 426 67.6
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.6e-143 513.5 416 67.1
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 5.8e-141 505.0 444 62.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.8e-141 504.2 420 65.5
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 9.8e-141 504.2 420 65.5
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.9e-140 501.9 424 64.4
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 4.9e-140 501.9 431 66.1
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 6.4e-140 501.5 431 65.2
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 6.4e-140 501.5 431 64.3
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 8.3e-140 501.1 424 64.4
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 7.0e-139 498.0 431 64.3
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 7.0e-139 498.0 428 64.5
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 9.2e-139 497.7 433 63.5
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-138 496.9 424 64.2
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-138 496.9 420 65.5
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.0e-137 494.2 431 63.8
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-137 493.8 444 60.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-137 493.8 444 60.6
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.3e-137 493.0 444 60.1
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.6e-137 491.1 395 67.8
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.5e-136 490.3 425 64.9
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 2.5e-136 489.6 444 60.1
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.3e-136 489.2 444 60.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 3.3e-136 489.2 422 63.0
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.3e-136 489.2 426 62.7
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.5e-136 487.6 444 59.9
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 9.5e-136 487.6 426 64.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 9.5e-136 487.6 429 63.9
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-135 486.1 444 59.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-135 485.7 444 59.7
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 8.0e-135 484.6 420 62.9
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.1e-134 484.2 426 64.1
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 4.0e-134 482.3 427 60.7
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.0e-133 479.9 429 63.2
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.9e-132 476.1 434 60.6
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 6.4e-132 474.9 426 61.5
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-131 474.2 427 60.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.4e-131 473.8 424 61.3
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.2e-131 472.6 426 60.8
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.2e-131 472.6 426 60.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 4.1e-131 472.2 432 61.3
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.6e-130 470.3 426 60.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.5e-130 469.2 433 61.7
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.6e-130 468.8 430 61.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.0e-129 467.6 379 63.3
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 8.6e-129 464.5 428 60.0
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 8.6e-129 464.5 423 59.8
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 4.7e-127 458.8 434 59.2
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 8.9e-126 454.5 425 58.6
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 2.6e-125 453.0 444 58.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.4e-125 452.6 432 59.3
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 5.8e-125 451.8 426 58.7
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 7.5e-125 451.4 422 60.7
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.3e-124 450.7 415 60.7
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 4.1e-123 445.7 422 58.5
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 3.5e-122 442.6 430 57.2
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 3.5e-122 442.6 413 60.5
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.0e-121 441.0 428 57.9
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.3e-121 440.7 417 59.2
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.9e-120 436.8 427 58.8
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.4e-118 430.6 424 58.7
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.8e-118 430.3 430 58.1
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 5.2e-118 428.7 425 56.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 5.2e-118 428.7 430 57.2
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 8.9e-118 427.9 414 58.0
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 2.6e-117 426.4 400 58.5
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 9.9e-117 424.5 430 56.5
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 4.9e-116 422.2 417 57.6
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-115 419.9 429 57.3
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.4e-115 419.9 420 57.9
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 4.6e-114 415.6 427 52.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-114 415.6 427 57.4
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.6e-114 415.6 429 56.6
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.0e-114 415.2 429 56.9
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 6.0e-114 415.2 429 56.9
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 7.8e-114 414.8 429 56.9
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.5e-112 410.6 428 55.8
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 6.2e-111 405.2 419 53.7
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.4e-110 403.3 430 55.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 4.0e-110 402.5 419 54.9
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 9.0e-110 401.4 419 53.7
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 9.9e-109 397.9 336 64.3
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 3.2e-107 392.9 431 52.2
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.1e-106 390.2 347 62.0
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.0e-105 387.9 383 59.5
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 8.1e-103 378.3 430 50.2
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 5.3e-102 375.6 418 50.5
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.2e-101 374.4 423 51.3
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.6e-101 371.7 344 62.5
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 8.4e-100 368.2 434 49.8
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.3e-95 354.4 427 46.6
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.3e-92 344.4 432 47.0
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.9e-89 332.8 430 49.5
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 9.6e-88 328.2 376 49.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.0e-86 322.8 376 49.5
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 4.6e-82 309.3 442 43.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.6e-69 266.9 369 48.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 3.8e-68 263.1 290 52.1
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-64 250.8 430 41.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-62 245.0 420 41.4
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-61 241.5 373 43.7
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 6.5e-60 235.7 419 40.6
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-59 235.0 420 38.8
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.5e-59 234.6 407 37.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 7.2e-59 232.3 419 40.3
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 2.1e-58 230.7 420 39.8
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 5.9e-53 212.6 315 45.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.9e-52 210.3 145 72.4
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 5.0e-52 209.5 172 64.5
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.4e-48 196.8 247 49.4
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-47 193.7 429 36.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 2.7e-42 177.2 426 32.9
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 4.0e-41 173.3 175 59.4
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.5e-40 171.4 355 36.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 2.4e-38 164.1 119 72.3
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 3.5e-37 160.2 160 59.4
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-36 158.7 378 36.0
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.3e-36 158.3 136 60.3
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 8.6e-36 155.6 371 35.0
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 7.2e-35 152.5 283 40.6
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 2.3e-33 147.5 409 30.8
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 6.8e-33 146.0 120 67.5
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.1e-30 138.7 111 65.8
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.4e-30 136.3 325 35.1
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-29 132.9 354 33.6
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-28 131.7 94 73.4
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 8.6e-28 129.0 158 51.3
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-27 127.9 94 71.3
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-26 125.2 355 31.5
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-26 124.8 106 63.2
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-25 122.1 372 32.0
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.4e-25 121.7 90 66.7
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 4.0e-25 120.2 351 27.6
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.5e-24 118.2 71 77.5
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-21 108.6 137 51.8
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-20 104.8 90 61.1
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.3e-19 100.1 109 55.0
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-18 98.6 90 58.9
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 6.2e-18 96.3 85 56.5
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.0e-16 91.3 185 39.5
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-14 85.1 303 28.4
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-13 81.6 218 33.9
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.6e-13 81.6 218 33.9
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.7e-13 80.9 218 33.9
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.5e-11 75.1 51 72.5
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-10 71.6 96 37.5
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 5.2e-09 66.6 80 47.5
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.1e-06 56.2 47 63.8


User provided reference genes

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