Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00046 Eucalyptus grandis HOM05D007370 ORTHO05D009394 1.8e-113 412.5 199 100.0
Eucgr.A00294 Eucalyptus grandis HOM05D007370 ORTHO05D009394 8.9e-113 410.2 198 99.5
COL.COLO4_34615 Corchorus olitorius HOM05D007370 ORTHO05D009394 7.1e-86 320.9 198 75.8
Duzib052G0732 Durio zibethinus HOM05D007370 ORTHO05D009394 2.7e-85 318.9 198 75.8
Prupe.1G117500 Prunus persica HOM05D007370 ORTHO05D009394 1.0e-84 317.0 198 74.7
PGR142G3192 Punica granatum HOM05D007370 ORTHO05D009394 1.3e-84 316.6 198 76.3
Rhsim02G0003800 Rhododendron simsii HOM05D007370 ORTHO05D009394 1.3e-84 316.6 199 77.4
Thecc.04G300700 Theobroma cacao HOM05D007370 ORTHO05D009394 1.3e-84 316.6 198 74.7
Atru.chr4.3000 Acer truncatum HOM05D007370 ORTHO05D009394 3.0e-84 315.5 198 75.8
Sed0008389 Sechium edule HOM05D007370 ORTHO05D009394 5.1e-84 314.7 198 76.3
CiPaw.01G138600 Carya illinoinensis HOM05D007370 ORTHO05D009394 9.6e-83 310.5 198 73.2
Nn6g33643 Nelumbo nucifera HOM05D007370 ORTHO05D009394 9.6e-83 310.5 200 76.0
Gohir.A01G034400 Gossypium hirsutum HOM05D007370 ORTHO05D009394 1.3e-82 310.1 204 73.0
Manes.15G004200 Manihot esculenta HOM05D007370 ORTHO05D009394 2.8e-82 308.9 198 73.7
RcHm_v2.0_Chr4g0425231 Rosa chinensis HOM05D007370 ORTHO05D009394 2.8e-82 308.9 198 74.2
Potri.010G145700 Populus trichocarpa HOM05D007370 ORTHO05D009394 3.7e-82 308.5 198 71.7
Haze_01298 Corylus avellana HOM05D007370 ORTHO05D009394 2.4e-81 305.8 198 72.7
Sc13g0006460 Simmondsia chinensis HOM05D007370 ORTHO05D009394 2.4e-81 305.8 197 72.6
FvH4_4g19730 Fragaria vesca HOM05D007370 ORTHO05D009394 6.9e-81 304.3 198 72.7
TAR362G0601 Trochodendron aralioides HOM05D007370 ORTHO05D009394 6.9e-81 304.3 198 74.2
Dinv15168 Davidia involucrata HOM05D007370 ORTHO05D009394 9.0e-81 303.9 198 73.2
FAN07G1244 Fragaria x ananassa HOM05D007370 ORTHO05D009394 1.2e-80 303.5 197 73.1
CsaV3_6G022350 Cucumis sativus L. HOM05D007370 ORTHO05D009394 1.0e-79 300.4 199 72.9
VMungo0540G1057 Vigna mungo HOM05D007370 ORTHO05D009394 1.0e-79 300.4 198 73.2
MBI18_g37561_MAGBIO Magnolia biondii HOM05D007370 ORTHO05D009394 1.3e-79 300.1 205 72.2
Lj6g0027049 Lotus japonicus HOM05D007370 ORTHO05D009394 3.8e-79 298.5 198 72.2
Phvul.006G118000 Phaseolus vulgaris HOM05D007370 ORTHO05D009394 4.9e-79 298.1 198 72.2
TPR.G27253 Trifolium pratense HOM05D007370 ORTHO05D009394 1.4e-78 296.6 196 73.0
Glyma.09G035700 Glycine max HOM05D007370 ORTHO05D009394 2.5e-78 295.8 198 71.2
Gorai.002G030100 Gossypium raimondii HOM05D007370 ORTHO05D009394 3.2e-78 295.4 226 65.9
Sopen12g033950 Solanum pennellii HOM05D007370 ORTHO05D009394 4.2e-78 295.0 198 72.7
arahy.Tifrunner.gnm1.ann1.VHF2FI Arachis hypogaea HOM05D007370 ORTHO05D009394 1.6e-77 293.1 198 73.2
Medtr2g034140 Medicago truncatula HOM05D007370 ORTHO05D009394 3.5e-77 292.0 193 73.6
arahy.Tifrunner.gnm1.ann1.HMTG6S Arachis hypogaea HOM05D007370 ORTHO05D009394 4.6e-77 291.6 187 76.5
Solyc12g099270.2 Solanum lycopersicum HOM05D007370 ORTHO05D009394 7.9e-77 290.8 198 72.7
DCAR_002511 Daucus carota HOM05D007370 ORTHO05D009394 2.3e-76 289.3 198 71.7
Migut.G00060 Erythranthe guttata HOM05D007370 ORTHO05D009394 2.3e-76 289.3 198 68.7
ATR0693G166 Amborella trichopoda HOM05D007370 ORTHO05D009394 1.1e-75 287.0 198 67.2
Psat1g161680 Pisum sativum HOM05D007370 ORTHO05D009394 1.1e-75 287.0 193 71.0
Cc03_g00820 Coffea canephora HOM05D007370 ORTHO05D009394 1.5e-75 286.6 198 68.7
MD16G1154200 Malus domestica HOM05D007370 ORTHO05D009394 1.3e-74 283.5 198 71.2
ECA248G2723 Erigeron canadensis HOM05D007370 ORTHO05D009394 4.8e-74 281.6 185 72.4
HanXRQChr01g0030981 Helianthus annuus HOM05D007370 ORTHO05D009394 3.1e-73 278.9 198 67.7
PGSC0003DMG400004697 Solanum tuberosum HOM05D007370 ORTHO05D009394 3.1e-73 278.9 198 69.7
SalBow8G4515 Salvia bowleyana HOM05D007370 ORTHO05D009394 9.0e-73 277.3 198 66.7
CAN.G484.61 Capsicum annuum HOM05D007370 ORTHO05D009394 2.0e-72 276.2 198 69.2
Peaxi162Scf00120g00023 Petunia axillaris HOM05D007370 ORTHO05D009394 2.0e-72 276.2 198 68.2
arahy.Tifrunner.gnm1.ann1.DXY8A4 Arachis hypogaea HOM05D007370 ORTHO05D009394 5.9e-72 274.6 231 62.3
AUR62039281 Chenopodium quinoa HOM05D007370 ORTHO05D009394 1.0e-71 273.9 198 66.2
Lalb_Chr20g0120861 Lupinus albus HOM05D007370 ORTHO05D009394 1.0e-71 273.9 198 69.2
Nitab4.5_0002150g0160 Nicotiana tabacum HOM05D007370 ORTHO05D009394 1.3e-71 273.5 198 69.2
Nitab4.5_0002294g0020 Nicotiana tabacum HOM05D007370 ORTHO05D009394 3.8e-71 271.9 198 67.2
AUR62016207 Chenopodium quinoa HOM05D007370 ORTHO05D009394 1.4e-70 270.0 185 69.2
Zm00001eb356360 Zea mays HOM05D007370 ORTHO05D009394 4.2e-70 268.5 186 68.8
EL10Ac3g05507 Beta vulgaris HOM05D007370 ORTHO05D009394 5.5e-70 268.1 198 65.2
Lj6A691G74 Lonicera japonica HOM05D007370 ORTHO05D009394 2.7e-69 265.8 198 66.7
unitig_37.g12412 Utricularia gibba HOM05D007370 ORTHO05D009394 1.3e-68 263.5 207 63.8
SEGI_11896 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 2.3e-68 262.7 192 66.1
Lsat_1_v5_gn_1_41060 Lactuca sativa HOM05D007370 ORTHO05D009394 4.3e-67 258.5 192 65.1
CDE08G1199 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 5.7e-67 258.1 198 63.6
Peaxi162Scf01160g00001 Petunia axillaris HOM05D007370 ORTHO05D009394 1.6e-66 256.5 189 68.8
QL06p012270 Quercus lobata HOM05D007370 ORTHO05D009394 8.2e-66 254.2 190 64.7
Os05g0157300 Oryza sativa ssp. japonica HOM05D007370 ORTHO05D009394 2.2e-63 246.1 186 64.5
SGA_v2.0_scaffold104G30077 Striga asiatica HOM05D007370 ORTHO05D009394 1.2e-61 240.4 198 60.6
GSVIVG01034991001 Vitis vinifera HOM05D007370 ORTHO05D009394 4.6e-61 238.4 149 74.5
Hund11933 Selenicereus undatus HOM05D007370 ORTHO05D009394 8.8e-60 234.2 197 60.9
Ca_03237_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 4.4e-59 231.9 164 70.1
Sabra10G0112300 Salix brachista HOM05D007370 ORTHO05D009394 1.7e-58 229.9 151 70.2
Mapoly0007s0102 Marchantia polymorpha HOM05D007370 ORTHO05D009394 1.4e-57 226.9 196 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2788 Anthoceros agrestis HOM05D007370 ORTHO05D009394 1.8e-57 226.5 189 57.1
Pp3c14_3570 Physcomitrium patens HOM05D007370 ORTHO05D009394 3.8e-55 218.8 212 54.2
CBR_g50285 Chara braunii HOM05D007370 ORTHO05D009394 1.1e-54 217.2 215 50.7
FAN12G3716 Fragaria x ananassa HOM05D007370 ORTHO05D009394 5.5e-54 214.9 198 56.6
TWI09G1560 Tripterygium wilfordii HOM05D007370 ORTHO05D009394 8.8e-52 207.6 198 53.5
Gohir.D01G023538 Gossypium hirsutum HOM05D007370 ORTHO05D009394 3.6e-45 185.7 115 73.0
CSS0048431 Camellia sinensis var. sinensis HOM05D007370 ORTHO05D009394 2.6e-43 179.5 115 73.9
ClCG06G004600 Citrullus lanatus HOM05D007370 ORTHO05D009394 4.8e-42 175.3 127 68.5
Ah.04g156700 Amaranthus hybridus HOM05D007370 ORTHO05D009394 1.4e-41 173.7 198 47.5
MELO3C021271.2 Cucumis melo HOM05D007370 ORTHO05D009394 7.0e-41 171.4 116 69.8
arahy.Tifrunner.gnm1.ann1.CV4FMG Arachis hypogaea HOM05D007370 ORTHO05D009394 7.7e-40 167.9 150 58.7
arahy.Tifrunner.gnm1.ann1.Y96K7L Arachis hypogaea HOM05D007370 ORTHO05D009394 3.8e-39 165.6 132 60.6
vmacro15183 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 5.0e-39 165.2 97 83.5
Glyma.15G140501 Glycine max HOM05D007370 ORTHO05D009394 5.5e-38 161.8 114 65.8
Mapoly0007s0137 Marchantia polymorpha HOM05D007370 ORTHO05D009394 4.4e-35 152.1 197 41.1
vmacro15182 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 5.7e-35 151.8 101 70.3
HPP92_027782 Vanilla planifolia HOM05D007370 ORTHO05D009394 1.2e-32 144.1 99 63.6
Cpa.g.sc9.57 Carica papaya HOM05D007370 ORTHO05D009394 1.6e-32 143.7 100 64.0
QL06p020122 Quercus lobata HOM05D007370 ORTHO05D009394 1.0e-31 141.0 192 42.7
CDE02G4406 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 1.9e-30 136.7 98 67.3
HPP92_027781 Vanilla planifolia HOM05D007370 ORTHO05D009394 8.8e-28 127.9 129 52.7
SMO145G0205 Selaginella moellendorffii HOM05D007370 ORTHO05D009394 1.2e-27 127.5 190 39.5
Hund11975 Selenicereus undatus HOM05D007370 ORTHO05D009394 5.4e-25 118.6 91 59.3
MD13G1153900 Malus domestica HOM05D007370 ORTHO05D009394 1.3e-23 114.0 72 76.4
Actinidia14258 Actinidia chinensis HOM05D001648 ORTHO05D001657 5.4e-17 92.0 102 47.1
Potri.008G105401 Populus trichocarpa HOM05D007370 ORTHO05D009394 2.5e-14 83.2 67 64.2
MD13G1154300 Malus domestica HOM05D007370 ORTHO05D009394 4.9e-10 68.9 39 87.2


User provided reference genes

Program Settings