Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.1e-142 507.7 294 100.0
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 4.1e-98 362.1 285 76.1
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 4.3e-95 352.1 304 66.8
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.8e-93 346.7 303 71.3
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.3e-93 346.3 309 68.0
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 1.2e-92 344.0 307 70.7
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.2e-92 344.0 317 68.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-92 343.6 285 71.6
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.9e-91 338.6 313 67.4
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.4e-90 336.3 302 70.2
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.6e-89 333.6 297 72.1
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 3.5e-89 332.4 308 64.6
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.0e-89 331.6 296 65.2
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.0e-88 330.9 292 70.5
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.3e-88 330.5 296 65.2
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 8.6e-88 327.8 304 66.1
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.9e-87 326.6 302 72.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.5e-87 326.2 296 64.2
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.3e-87 325.5 296 72.0
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.1e-86 323.2 306 63.1
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 6.2e-86 321.6 298 66.4
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.1e-86 321.2 278 71.6
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 8.1e-86 321.2 294 66.3
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.3e-85 319.7 298 69.5
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 8.9e-85 317.8 300 70.0
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.5e-84 317.0 295 63.4
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.0e-84 316.6 301 70.1
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 3.4e-84 315.8 297 65.0
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 3.4e-84 315.8 295 64.7
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 4.4e-84 315.5 294 69.0
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 4.4e-84 315.5 294 69.0
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 7.5e-84 314.7 295 63.1
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 9.8e-84 314.3 298 69.8
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.8e-84 314.3 318 64.2
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.2e-83 313.2 304 64.8
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.9e-83 312.8 291 68.7
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.9e-83 312.8 291 68.7
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.7e-83 312.4 297 68.7
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 3.7e-83 312.4 301 63.5
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 6.4e-83 311.6 298 64.1
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.3e-83 311.2 281 71.9
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.4e-82 310.5 311 64.3
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-82 310.5 292 70.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.9e-82 310.1 305 60.7
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.6e-81 307.0 313 63.3
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.6e-81 307.0 313 62.6
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 2.1e-81 306.6 298 65.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 2.7e-81 306.2 332 59.0
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 4.6e-81 305.4 302 67.5
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 7.8e-81 304.7 330 63.0
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.3e-80 303.1 302 67.2
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 5.1e-80 302.0 300 64.3
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 6.6e-80 301.6 297 66.7
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 8.6e-80 301.2 295 67.8
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.5e-79 300.4 309 63.1
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 2.5e-79 299.7 319 63.9
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 7.3e-79 298.1 345 59.7
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.2e-78 297.4 294 66.7
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.6e-78 297.0 278 68.3
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 1.6e-78 297.0 295 65.1
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.1e-78 296.6 318 57.2
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.8e-78 296.2 306 65.4
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.8e-78 296.2 302 62.3
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 3.6e-78 295.8 296 62.8
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 4.7e-78 295.4 328 63.1
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 8.1e-78 294.7 325 55.1
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 8.1e-78 294.7 309 62.5
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.4e-77 293.9 297 63.3
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.4e-77 293.9 293 61.4
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.3e-77 293.1 293 63.5
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 8.9e-77 291.2 294 63.3
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.6e-76 289.7 293 66.2
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 4.4e-76 288.9 292 58.2
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 7.6e-76 288.1 306 58.2
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 9.9e-76 287.7 287 65.2
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.3e-75 287.3 298 60.4
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 2.2e-75 286.6 289 66.4
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.2e-74 282.7 295 67.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 4.1e-74 282.3 295 59.7
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 7.1e-74 281.6 300 62.0
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 9.2e-74 281.2 320 64.1
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 2.1e-73 280.0 326 61.7
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.1e-73 280.0 308 54.5
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.5e-73 279.3 305 59.3
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 7.8e-73 278.1 292 61.3
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.0e-72 277.7 296 63.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.0e-72 277.7 296 63.5
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.3e-72 277.3 298 60.1
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.3e-72 276.6 296 59.5
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.0e-72 276.2 302 56.0
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 8.6e-72 274.6 299 62.9
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 4.3e-71 272.3 314 60.8
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-70 270.8 296 62.5
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 2.8e-70 269.6 329 58.1
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 4.7e-70 268.9 329 58.1
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 3.1e-69 266.2 392 49.7
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.1e-69 266.2 311 58.5
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.1e-69 266.2 301 62.1
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 8.9e-69 264.6 317 60.3
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.2e-68 264.2 321 56.4
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.5e-68 263.8 301 58.1
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 3.4e-68 262.7 287 62.4
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 5.8e-68 261.9 285 66.7
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 9.9e-68 261.2 300 61.7
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 8.4e-67 258.1 300 57.0
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.1e-66 257.7 319 57.4
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.9e-66 256.9 298 63.1
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 3.2e-66 256.1 316 57.3
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 5.4e-66 255.4 303 57.4
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 7.1e-66 255.0 326 55.2
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.6e-65 253.8 286 63.6
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 4.6e-65 252.3 301 56.8
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.0e-65 251.9 282 55.3
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 7.8e-65 251.5 313 57.5
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.3e-64 250.0 295 61.4
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.0e-64 249.6 305 59.7
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 3.0e-64 249.6 303 53.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.1e-63 247.7 316 56.3
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.9e-63 246.9 306 57.8
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.5e-63 246.5 306 57.5
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 5.6e-63 245.4 251 64.9
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 6.2e-62 241.9 286 58.7
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.1e-61 241.1 312 56.1
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 9.0e-61 238.0 292 61.0
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.4e-60 236.1 301 54.5
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 7.6e-60 235.0 284 60.2
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.8e-59 232.6 285 58.6
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.9e-58 230.3 306 55.9
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.1e-57 226.9 298 58.1
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.0e-56 224.6 288 50.7
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.3e-56 223.4 296 54.7
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 3.0e-56 223.0 283 58.3
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 5.1e-56 222.2 289 53.6
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.1e-55 221.1 281 54.8
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.9e-55 220.3 221 61.5
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.1e-54 216.9 302 54.3
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.1e-54 216.9 326 49.7
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.8e-54 215.7 206 67.0
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.9e-52 208.0 308 52.6
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.7e-51 207.2 289 51.9
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.4e-50 203.4 314 52.2
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.2e-50 203.0 213 63.4
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 4.2e-50 202.6 205 65.4
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.3e-48 197.6 212 67.0
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 6.2e-46 188.7 228 64.5
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.5e-44 182.6 281 49.8
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.7e-43 180.6 211 58.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.2e-41 174.5 275 46.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 6.0e-41 172.2 202 59.4
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.5e-39 166.8 238 55.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-38 164.1 103 77.7
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.6e-36 156.8 130 61.5
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 3.6e-33 146.4 152 60.5
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 5.7e-31 139.0 331 45.3
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 5.7e-31 139.0 313 40.6
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 3.1e-29 133.3 100 64.0
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.1e-29 133.3 318 43.4
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 5.9e-28 129.0 304 44.4
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.7e-27 127.5 335 45.4
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.2e-27 127.1 206 51.5
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.9e-27 126.7 98 74.5
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 4.6e-25 119.4 79 77.2
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.3e-24 117.1 132 56.8
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 4.8e-22 109.4 89 69.7
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.8e-21 107.5 210 46.7
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.8e-21 107.5 211 36.5
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.3e-21 105.9 70 75.7
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.0e-19 101.7 77 74.0
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.5e-19 99.0 155 54.8
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 6.5e-19 99.0 303 34.7
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.1e-18 98.2 63 76.2
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.9e-16 89.7 111 48.6
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 2.6e-15 87.0 58 67.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.0e-12 77.4 303 42.2
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.5e-11 72.0 42 85.7
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.6e-09 67.8 99 50.5
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.7e-09 66.2 127 43.3
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 3.0e-08 63.5 110 46.4
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.0e-07 60.8 294 36.4
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 2.6e-07 60.5 266 41.7
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 3.3e-07 60.1 63 54.0
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 9.7e-07 58.5 79 48.1
Duzib170G0932 Durio zibethinus HOM05D003822 ORTHO05D004484 6.3e-06 55.8 31 83.9


User provided reference genes

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