Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 4.6e-56 221.1 118 100.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.3e-47 193.0 118 87.3
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.3e-47 193.0 119 86.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.3e-47 192.2 107 93.5
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.0e-47 191.8 106 94.3
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 8.6e-47 190.3 106 90.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.5e-46 189.5 119 85.7
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 3.3e-46 188.3 106 92.5
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 3.3e-46 188.3 106 92.5
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.3e-46 187.2 118 84.7
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 7.3e-46 187.2 118 84.7
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.3e-46 187.2 112 86.6
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.2e-45 186.4 116 87.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.1e-45 185.7 106 89.6
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.7e-45 184.5 113 88.5
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.7e-45 184.5 113 88.5
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.2e-45 184.1 118 83.9
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 6.2e-45 184.1 106 89.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 8.1e-45 183.7 106 89.6
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 8.1e-45 183.7 107 86.9
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-44 183.3 118 83.9
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.4e-44 183.0 119 82.4
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.4e-44 183.0 121 84.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.8e-44 182.6 119 80.7
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.3e-44 182.2 107 86.0
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.0e-44 181.4 106 87.7
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.0e-44 181.4 112 83.9
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.0e-44 181.4 112 83.9
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 4.0e-44 181.4 106 89.6
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 4.0e-44 181.4 106 87.7
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-44 181.0 106 88.7
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 5.2e-44 181.0 118 80.5
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.8e-44 180.6 115 83.5
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 6.8e-44 180.6 119 80.7
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 6.8e-44 180.6 121 84.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 8.9e-44 180.3 119 80.7
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.2e-43 179.9 106 86.8
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.2e-43 179.9 121 83.5
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.0e-43 179.1 119 80.7
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.6e-43 178.7 113 83.2
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 2.6e-43 178.7 118 79.7
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-43 178.3 106 86.8
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-43 178.3 106 86.8
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-43 178.3 106 86.8
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.4e-43 178.3 113 82.3
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.4e-43 178.3 101 88.1
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.4e-43 177.9 106 86.8
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 5.8e-43 177.6 106 86.8
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 5.8e-43 177.6 112 86.6
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 9.8e-43 176.8 106 85.8
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 9.8e-43 176.8 105 86.7
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 9.8e-43 176.8 105 86.7
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 9.8e-43 176.8 100 88.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 9.8e-43 176.8 100 88.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 9.8e-43 176.8 100 88.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 9.8e-43 176.8 100 88.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 9.8e-43 176.8 106 85.8
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 9.8e-43 176.8 118 79.7
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.7e-42 176.0 106 85.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-42 175.3 106 85.8
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 2.9e-42 175.3 106 84.0
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 3.7e-42 174.9 100 87.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 3.7e-42 174.9 106 84.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 3.7e-42 174.9 114 79.8
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.9e-42 174.5 113 80.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.9e-42 174.5 105 83.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.9e-42 174.5 106 84.9
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 6.4e-42 174.1 106 84.0
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 6.4e-42 174.1 105 85.7
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 6.4e-42 174.1 105 85.7
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 8.3e-42 173.7 119 80.7
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.1e-41 173.3 105 85.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.1e-41 173.3 101 88.1
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-41 172.9 105 84.8
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.4e-41 172.9 105 84.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.4e-41 172.9 105 84.8
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.4e-41 172.9 105 85.7
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.4e-41 172.9 112 83.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.9e-41 172.6 103 83.5
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.9e-41 172.6 117 76.9
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.9e-41 172.6 106 83.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.9e-41 172.6 115 80.0
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.4e-41 172.2 100 86.0
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 3.2e-41 171.8 106 84.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.2e-41 171.8 105 83.8
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.1e-41 171.4 106 82.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.1e-41 171.4 106 82.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 7.1e-41 170.6 119 76.5
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 7.1e-41 170.6 102 82.4
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 9.2e-41 170.2 106 83.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 9.2e-41 170.2 102 83.3
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 9.2e-41 170.2 106 80.2
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.6e-40 169.5 103 82.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.1e-40 169.1 106 80.2
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.1e-40 169.1 106 80.2
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.1e-40 169.1 106 80.2
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 7.8e-40 167.2 112 76.8
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 7.8e-40 167.2 110 78.2
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 2.3e-39 165.6 106 79.2
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 5.1e-39 164.5 126 71.4
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 8.6e-39 163.7 115 73.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.1e-38 163.3 106 79.2
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.5e-38 162.9 117 71.8
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.9e-38 162.5 106 78.3
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 2.5e-38 162.2 98 80.6
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 3.3e-38 161.8 106 72.6
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 5.6e-38 161.0 106 77.4
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.6e-37 158.3 106 84.0
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.6e-37 158.3 105 77.1
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 8.1e-37 157.1 106 72.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.1e-36 156.8 114 70.2
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 3.1e-36 155.2 115 71.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.8e-36 154.1 117 73.5
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.2e-35 153.3 92 87.0
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.5e-35 152.9 106 77.4
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.6e-35 152.1 91 83.5
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 7.6e-35 150.6 106 69.8
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.4e-34 147.5 85 85.9
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 2.4e-33 145.6 96 76.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 3.2e-33 145.2 89 83.1
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 7.8e-32 140.6 102 75.5
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 5.1e-31 137.9 107 67.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.2e-27 126.7 114 58.8
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.0e-27 125.9 111 60.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.6e-27 125.6 85 77.6
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.4e-27 124.8 74 86.5
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 2.9e-26 122.1 74 85.1
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 2.9e-26 122.1 74 85.1
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.0e-24 114.4 67 85.1
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 5.1e-23 111.3 69 79.7
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 6.6e-23 110.9 68 79.4
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-22 109.8 70 77.1
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.3e-22 107.5 64 76.6
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 7.3e-22 107.5 98 55.1
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-21 106.7 69 78.3
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.3e-18 96.7 112 56.2
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-17 93.6 74 67.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 3.2e-17 92.0 56 80.4
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.7e-16 89.0 57 78.9
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.5e-16 88.6 73 65.8
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 4.6e-16 88.2 85 60.0
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.3e-15 86.7 103 48.5
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.8e-15 86.3 83 56.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 3.9e-15 85.1 114 45.6
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.7e-15 84.0 68 67.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 5.3e-12 74.7 53 69.8
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.6e-11 72.4 82 53.7
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 3.4e-11 72.0 60 56.7
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 7.6e-11 70.9 120 38.3
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.9e-09 66.2 52 67.3
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.9e-09 66.2 48 77.1
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 2.4e-09 65.9 37 89.2
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 3.2e-09 65.5 44 75.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.6e-08 63.2 61 60.7
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-08 60.8 74 48.6
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-07 59.3 38 76.3
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 1.1e-06 57.0 44 63.6
RcHm_v2.0_Chr1g0327371 Rosa chinensis HOM05D001997 ORTHO05D005560 5.6e-06 54.7 44 61.4


User provided reference genes

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