Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.3e-109 397.5 210 100.0
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.6e-59 231.9 134 90.3
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.3e-58 230.3 134 89.6
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 7.3e-57 224.6 209 59.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.4e-55 220.3 193 61.1
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.5e-54 216.9 197 58.9
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.0e-54 216.5 198 59.6
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 7.6e-54 214.5 199 57.3
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.9e-53 212.6 196 59.7
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.1e-52 210.7 196 59.2
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.4e-52 209.5 197 59.9
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.2e-52 208.8 198 57.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.2e-52 208.8 210 57.1
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 5.4e-52 208.4 194 59.3
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.3e-52 207.6 195 57.4
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.3e-52 207.6 195 57.4
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.8e-51 204.5 214 54.7
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.9e-50 202.2 199 57.3
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.6e-50 201.4 202 55.4
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 8.7e-50 201.1 163 67.5
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.5e-49 200.3 199 53.8
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 2.5e-49 199.5 193 57.5
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 4.3e-49 198.7 208 54.3
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 9.6e-49 197.6 199 56.8
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 9.6e-49 197.6 200 55.5
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.3e-48 197.2 208 51.9
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.6e-48 196.8 199 55.8
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 2.1e-48 196.4 210 53.8
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 3.4e-46 189.1 143 66.4
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.5e-46 188.7 203 53.2
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.1e-44 184.1 205 53.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.9e-44 183.3 173 57.2
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 3.2e-44 182.6 210 51.0
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 3.2e-44 182.6 157 63.7
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.4e-44 181.8 173 56.1
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 7.1e-44 181.4 206 51.5
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-43 180.6 194 55.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 3.5e-43 179.1 173 56.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.0e-42 177.6 171 56.1
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.3e-42 177.2 205 52.2
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 3.0e-42 176.0 174 57.5
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 3.0e-42 176.0 201 51.7
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 3.9e-42 175.6 173 54.9
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 5.1e-42 175.3 181 55.2
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 6.7e-42 174.9 183 52.5
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 8.7e-42 174.5 133 66.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 8.7e-42 174.5 208 48.6
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.5e-41 173.7 175 54.9
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 4.3e-41 172.2 191 53.9
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 5.6e-41 171.8 209 48.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 7.4e-41 171.4 205 50.2
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 7.4e-41 171.4 131 65.6
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 9.6e-41 171.0 205 50.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 9.6e-41 171.0 129 66.7
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 9.6e-41 171.0 204 50.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.3e-40 170.6 143 62.9
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.1e-39 167.5 207 50.7
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-39 167.2 226 45.6
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.8e-39 166.8 154 59.1
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.5e-38 163.7 203 49.3
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.8e-38 161.8 131 64.1
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.0e-37 161.0 172 55.2
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.0e-37 161.0 138 59.4
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.1e-36 157.5 192 49.0
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 3.2e-36 156.0 148 56.8
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 7.1e-36 154.8 195 48.7
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 7.1e-36 154.8 116 63.8
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 9.3e-36 154.5 165 55.8
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.5e-35 152.5 203 42.9
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.6e-35 152.1 144 58.3
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 4.6e-35 152.1 223 43.9
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 6.0e-35 151.8 138 58.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.1e-34 148.7 151 52.3
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 5.1e-34 148.7 135 57.0
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 6.7e-34 148.3 203 42.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 3.3e-33 146.0 93 76.3
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 7.4e-33 144.8 281 38.4
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 6.2e-32 141.7 141 53.2
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.1e-31 139.4 200 42.0
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 5.5e-28 128.6 202 44.1
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.8e-24 116.3 151 42.4
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.4e-23 114.0 162 36.4
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.8e-23 113.6 123 43.9
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.8e-23 113.6 148 41.2
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.4e-23 113.2 122 46.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-23 112.8 122 45.9
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.1e-23 112.5 148 41.2
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 9.0e-23 111.3 151 39.1
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.5e-22 110.5 178 37.6
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.5e-22 110.5 152 40.1
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 3.4e-22 109.4 162 36.4
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.5e-22 109.0 159 39.0
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 5.9e-22 108.6 123 46.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.9e-22 108.6 194 34.0
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 7.7e-22 108.2 148 39.2
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.9e-21 106.3 152 38.2
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 3.8e-21 105.9 211 33.2
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.8e-21 105.9 152 36.2
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 5.0e-21 105.5 121 42.1
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 6.5e-21 105.1 130 45.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.1e-20 104.4 120 40.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.4e-20 104.0 113 39.8
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.4e-20 104.0 152 38.2
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.4e-20 104.0 155 37.4
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-20 104.0 120 38.3
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.9e-20 103.6 119 40.3
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.9e-20 103.6 165 36.4
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 2.5e-20 103.2 169 34.9
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 3.2e-20 102.8 120 42.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 4.2e-20 102.4 117 39.3
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 4.2e-20 102.4 119 42.0
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 5.5e-20 102.1 215 32.1
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.5e-20 102.1 120 40.8
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 7.2e-20 101.7 120 37.5
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 7.2e-20 101.7 156 37.2
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 9.4e-20 101.3 120 37.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.2e-19 100.9 120 40.0
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 2.1e-19 100.1 216 31.5
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.7e-19 99.8 163 37.4
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 2.7e-19 99.8 119 41.2
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 3.6e-19 99.4 116 37.9
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 4.6e-19 99.0 118 41.5
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.6e-19 99.0 153 36.6
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.1e-19 98.6 215 32.6
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.4e-18 97.4 161 32.9
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.4e-18 97.4 70 67.1
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.8e-18 97.1 119 36.1
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.3e-18 96.7 120 40.0
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.0e-18 96.3 122 41.8
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 5.1e-18 95.5 149 34.2
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 5.1e-18 95.5 120 38.3
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.5e-17 94.0 144 37.5
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.5e-17 94.0 149 32.2
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 3.3e-17 92.8 180 31.1
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.3e-17 92.4 194 29.9
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 5.7e-17 92.0 149 32.9
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 9.7e-17 91.3 149 32.9
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.2e-16 90.1 93 54.8
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 4.8e-16 89.0 149 31.5
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 6.3e-16 88.6 171 29.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-15 87.8 127 34.6
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.4e-15 87.4 111 37.8
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.8e-15 87.0 162 35.2
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.4e-15 86.7 120 35.8
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 2.4e-15 86.7 149 31.5
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 9.1e-15 84.7 120 45.8
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.2e-14 84.3 89 42.7
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.5e-14 84.0 121 34.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 3.8e-13 79.3 109 37.6
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 6.5e-13 78.6 114 38.6
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 5.5e-12 75.5 258 29.5
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.2e-11 74.3 86 43.0
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.6e-11 73.9 86 43.0
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 2.1e-11 73.6 153 33.3
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 6.1e-11 72.0 152 30.3
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.0e-10 71.2 213 31.5
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 1.4e-10 70.9 39 87.2
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.4e-10 70.9 69 56.5
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.3e-10 70.1 75 50.7
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.7e-10 68.6 76 42.1
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.1e-09 67.8 150 31.3
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 3.3e-09 66.2 130 38.5
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.8e-07 60.5 121 32.2
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 1.2e-06 57.8 167 30.5
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.9e-06 55.5 58 53.4
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.9e-06 55.5 86 38.4


User provided reference genes

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