Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.2e-69 265.0 138 100.0
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 9.4e-69 263.5 138 99.3
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.7e-60 234.6 134 90.3
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 6.3e-25 117.9 134 54.5
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 6.3e-25 117.9 134 50.7
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.7e-23 112.5 135 50.4
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.7e-23 112.5 125 52.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 7.8e-23 110.9 127 50.4
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.0e-22 110.5 130 47.7
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 3.9e-22 108.6 123 52.0
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.0e-22 108.2 130 46.2
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.0e-22 108.2 130 46.2
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 5.0e-22 108.2 136 49.3
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 6.6e-22 107.8 134 50.0
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.5e-21 106.7 118 54.2
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.9e-21 106.3 135 51.9
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.3e-21 105.1 135 50.4
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 5.6e-21 104.8 124 47.6
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 5.6e-21 104.8 139 48.9
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.2e-20 103.6 137 50.4
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.6e-20 102.1 135 47.4
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.7e-20 101.7 125 46.4
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 1.8e-19 99.8 140 47.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.1e-19 99.0 135 43.7
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.0e-19 98.6 151 42.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.2e-18 97.1 123 48.8
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.5e-18 96.7 124 50.0
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 2.0e-18 96.3 137 45.3
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.4e-18 95.5 123 46.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 9.8e-18 94.0 80 62.5
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.9e-17 92.4 105 51.4
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 8.3e-17 90.9 82 62.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.9e-16 89.7 89 57.3
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 2.4e-16 89.4 133 44.4
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 3.2e-16 89.0 88 59.1
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.2e-16 89.0 88 59.1
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 5.4e-16 88.2 139 41.0
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 5.4e-16 88.2 82 59.8
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.7e-15 85.9 91 56.0
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 6.0e-15 84.7 68 64.7
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.0e-14 84.0 81 56.8
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.3e-14 83.6 134 40.3
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-14 83.2 134 39.6
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.7e-14 83.2 82 56.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.3e-14 82.8 129 42.6
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 3.9e-14 82.0 137 43.1
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 3.9e-14 82.0 83 53.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 5.0e-14 81.6 127 44.9
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 5.0e-14 81.6 58 70.7
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.6e-14 81.3 60 66.7
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 6.6e-14 81.3 127 44.9
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 6.6e-14 81.3 84 53.6
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.6e-14 81.3 57 71.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.1e-13 80.5 70 62.9
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.1e-13 80.5 84 53.6
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.5e-13 80.1 59 66.1
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.5e-13 80.1 60 63.3
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.5e-13 80.1 111 44.1
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.5e-13 79.3 81 54.3
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 2.5e-13 79.3 83 53.0
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 3.3e-13 79.0 134 43.3
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 5.6e-13 78.2 82 54.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.6e-13 78.2 101 47.5
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 5.6e-13 78.2 71 59.2
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 7.3e-13 77.8 81 51.9
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.6e-12 76.6 82 52.4
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.1e-12 76.3 81 56.8
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.1e-12 76.3 117 42.7
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 2.1e-12 76.3 132 40.2
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.2e-12 74.7 58 62.1
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.1e-11 73.9 81 54.3
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.4e-11 73.6 72 54.2
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 3.1e-11 72.4 130 37.7
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.2e-10 70.5 58 60.3
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.5e-10 70.1 129 39.5
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.0e-10 69.7 138 37.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.7e-09 66.6 65 50.8
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.9e-09 65.9 79 49.4
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.9e-09 65.9 67 53.7
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.9e-09 65.1 138 36.2
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 6.4e-09 64.7 94 41.5
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.4e-08 62.8 127 36.2
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 5.4e-08 61.6 68 52.9
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.6e-07 60.1 62 53.2
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.5e-07 58.9 59 54.2
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 4.6e-07 58.5 77 39.0
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 6.0e-07 58.2 81 38.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 6.0e-07 58.2 74 39.2
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.7e-06 56.6 80 36.2
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-06 56.6 76 39.5
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.7e-06 56.6 46 50.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.7e-06 56.6 74 39.2
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.3e-06 56.2 48 50.0
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.3e-06 56.2 48 50.0
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.3e-06 56.2 48 50.0
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 5.1e-06 55.1 108 31.5
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 6.6e-06 54.7 94 43.6
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.6e-06 54.7 76 38.2
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 6.6e-06 54.7 74 37.8
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 8.6e-06 54.3 111 34.2
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.6e-06 54.3 80 37.5


User provided reference genes

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