Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.2e-75 284.6 148 100.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.6e-29 133.3 90 75.6
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 2.7e-29 132.5 88 73.9
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.7e-29 132.5 80 82.5
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 4.6e-29 131.7 85 75.3
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 7.8e-29 131.0 85 75.3
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.0e-28 130.6 83 77.1
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.0e-28 130.6 90 71.1
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.7e-28 129.8 85 75.3
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 3.0e-28 129.0 82 78.0
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.0e-28 129.0 85 75.3
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 3.0e-28 129.0 85 75.3
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 6.6e-28 127.9 90 70.0
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 8.6e-28 127.5 77 80.5
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 8.6e-28 127.5 90 68.9
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 2.5e-27 125.9 85 72.9
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.5e-27 125.9 85 72.9
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 4.3e-27 125.2 83 73.5
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 4.3e-27 125.2 82 74.4
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.6e-26 123.2 91 70.3
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.1e-26 122.9 85 71.8
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 8.0e-26 120.9 78 73.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 8.0e-26 120.9 80 73.8
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.1e-25 120.6 80 72.5
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.4e-25 120.2 80 73.8
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-25 120.2 83 72.3
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.8e-25 119.8 96 63.5
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 4.0e-25 118.6 92 68.5
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 4.0e-25 118.6 80 73.8
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 6.8e-25 117.9 87 70.1
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 8.9e-25 117.5 85 67.1
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.0e-24 116.3 81 72.8
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 3.4e-24 115.5 81 67.9
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.4e-24 115.5 85 68.2
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 3.4e-24 115.5 81 72.8
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 4.4e-24 115.2 83 66.3
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 4.4e-24 115.2 84 67.9
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.8e-24 114.8 78 67.9
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.2e-23 112.8 85 64.7
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 2.2e-23 112.8 85 64.7
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.9e-23 112.5 83 61.4
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.9e-23 112.5 92 62.0
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 3.7e-23 112.1 78 66.7
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.9e-23 111.7 88 65.9
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 8.3e-23 110.9 78 66.7
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 7.0e-22 107.8 89 62.9
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 9.2e-22 107.5 78 64.1
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.6e-21 106.7 82 64.6
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.5e-21 105.5 89 60.7
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 3.5e-21 105.5 82 59.8
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 7.8e-21 104.4 99 56.6
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.3e-20 103.6 85 61.2
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.3e-20 102.8 89 59.6
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 3.9e-20 102.1 72 73.6
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 3.9e-20 102.1 72 73.6
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.5e-19 100.1 86 64.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 2.5e-19 99.4 80 58.8
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 3.3e-19 99.0 75 58.7
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 4.3e-19 98.6 66 71.2
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 4.3e-19 98.6 90 56.7
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.2e-18 97.1 90 56.7
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 8.1e-18 94.4 85 62.4
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.3e-17 92.8 92 51.1
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.3e-17 92.8 86 57.0
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.0e-17 92.0 85 52.9
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 4.0e-17 92.0 80 56.2
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.2e-16 90.5 77 58.4
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 9.9e-16 87.4 68 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 1.3e-15 87.0 77 55.8
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.1e-14 84.0 68 64.7
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.4e-14 83.6 82 51.2
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 2.1e-13 79.7 78 46.2
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.7e-13 79.3 74 54.1
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.0e-12 77.4 78 46.2
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.7e-12 76.6 85 45.9
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 8.6e-12 74.3 77 45.5
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.1e-11 73.9 78 43.6
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.9e-11 73.2 76 47.4
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.5e-11 72.8 77 46.8
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 3.3e-11 72.4 90 41.1
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 5.6e-11 71.6 86 43.0
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.3e-11 71.2 93 44.1
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.3e-11 71.2 84 42.9
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 9.5e-11 70.9 77 42.9
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 9.5e-11 70.9 77 42.9
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 9.5e-11 70.9 76 43.4
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.6e-10 70.1 77 42.9
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.6e-10 70.1 77 42.9
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.6e-10 70.1 77 42.9
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.6e-10 70.1 76 42.1
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.1e-10 69.7 77 41.6
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 2.1e-10 69.7 76 43.4
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 2.1e-10 69.7 77 42.9
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.8e-10 69.3 77 41.6
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 2.8e-10 69.3 76 43.4
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.8e-10 69.3 84 41.7
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.8e-10 69.3 77 42.9
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.8e-10 69.3 77 41.6
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.8e-10 69.3 77 42.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.6e-10 68.9 77 41.6
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.6e-10 68.9 77 41.6
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.7e-10 68.6 84 41.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 4.7e-10 68.6 80 42.5
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 4.7e-10 68.6 73 43.8
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 4.7e-10 68.6 77 42.9
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 4.7e-10 68.6 77 44.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 4.7e-10 68.6 77 41.6
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 6.2e-10 68.2 75 42.7
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 6.2e-10 68.2 75 42.7
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 6.2e-10 68.2 79 43.0
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 6.2e-10 68.2 76 42.1
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 6.2e-10 68.2 77 41.6
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.1e-10 67.8 76 42.1
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.1e-10 67.8 83 39.8
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 8.1e-10 67.8 76 42.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 8.1e-10 67.8 76 42.1
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.1e-09 67.4 39 79.5
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-09 67.4 82 37.8
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.1e-09 67.4 78 41.0
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.4e-09 67.0 77 41.6
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.4e-09 67.0 77 41.6
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.8e-09 66.6 75 42.7
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 1.8e-09 66.6 82 37.8
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.4e-09 66.2 97 35.1
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.4e-09 66.2 77 40.3
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.4e-09 66.2 77 40.3
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.4e-09 66.2 77 40.3
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.4e-09 66.2 74 43.2
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.0e-09 65.5 80 37.5
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 4.0e-09 65.5 112 34.8
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 5.2e-09 65.1 77 40.3
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.8e-09 64.7 77 40.3
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 6.8e-09 64.7 74 40.5
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 8.9e-09 64.3 77 39.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 8.9e-09 64.3 77 39.0
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.2e-08 63.9 71 45.1
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.5e-08 63.5 76 39.5
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 2.0e-08 63.2 72 40.3
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.6e-08 62.8 72 40.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.6e-08 62.8 72 40.3
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.6e-08 62.8 74 40.5
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.6e-08 62.8 76 40.8
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.6e-08 62.8 77 39.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 7.6e-08 61.2 39 71.8
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 7.6e-08 61.2 73 38.4
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 7.6e-08 61.2 72 38.9
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.3e-07 60.5 75 38.7
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.3e-07 60.5 75 38.7
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.3e-07 60.5 64 46.9
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 2.2e-07 59.7 77 36.4
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.9e-07 59.3 77 35.1
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.8e-07 58.9 77 35.1
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.1e-06 57.4 77 41.6
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-06 57.4 64 40.6
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-06 57.0 128 32.0
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 3.2e-06 55.8 62 50.0


User provided reference genes

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