Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 3.7e-123 444.9 228 100.0
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 9.3e-98 360.5 230 82.6
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.9e-95 352.8 230 81.7
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 1.8e-93 346.3 215 80.9
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 4.5e-84 315.1 232 70.7
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 7.6e-84 314.3 232 71.6
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 4.9e-83 311.6 231 72.7
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 2.5e-82 309.3 232 69.0
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 4.2e-82 308.5 226 73.0
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 9.3e-82 307.4 231 70.6
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 1.2e-81 307.0 225 69.8
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 1.2e-81 307.0 225 69.8
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 1.6e-81 306.6 225 70.2
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 2.7e-81 305.8 231 68.4
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 3.5e-81 305.4 223 69.5
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 6.1e-81 304.7 231 69.7
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 7.9e-81 304.3 225 69.3
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 7.9e-81 304.3 225 69.3
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 1.3e-80 303.5 229 68.1
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 1.8e-80 303.1 232 69.0
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 1.8e-80 303.1 231 69.3
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 2.3e-80 302.8 235 68.9
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 2.3e-80 302.8 227 67.0
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 3.0e-80 302.4 229 69.0
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 3.0e-80 302.4 229 68.1
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 3.9e-80 302.0 229 68.1
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 3.9e-80 302.0 237 68.8
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 5.1e-80 301.6 226 69.5
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 4.3e-79 298.5 230 68.7
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 4.3e-79 298.5 230 68.7
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 4.3e-79 298.5 231 67.1
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 5.7e-79 298.1 230 68.7
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 1.3e-78 297.0 227 69.2
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.2e-78 296.2 236 68.2
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 2.2e-78 296.2 234 67.9
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 2.8e-78 295.8 232 69.0
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 6.3e-78 294.7 231 67.5
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 6.3e-78 294.7 230 66.5
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.1e-77 293.9 228 68.4
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 1.1e-77 293.9 231 68.4
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 1.4e-77 293.5 228 66.2
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.4e-77 293.5 228 66.2
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 1.8e-77 293.1 233 66.1
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 2.4e-77 292.7 230 66.5
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.1e-77 292.4 229 67.7
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 3.1e-77 292.4 228 65.8
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 4.1e-77 292.0 228 65.8
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 4.1e-77 292.0 234 66.2
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 4.1e-77 292.0 232 65.1
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 1.5e-76 290.0 225 68.0
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.0e-76 289.7 224 66.5
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 2.0e-76 289.7 229 66.4
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 3.4e-76 288.9 230 69.6
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 1.3e-75 287.0 228 65.8
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 1.7e-75 286.6 228 66.7
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 1.7e-75 286.6 228 64.9
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 2.9e-75 285.8 229 65.9
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 3.8e-75 285.4 226 66.4
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 6.5e-75 284.6 232 63.4
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 1.9e-74 283.1 227 65.2
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 1.9e-74 283.1 226 66.4
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 2.5e-74 282.7 259 61.0
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 5.5e-74 281.6 230 64.3
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 1.2e-73 280.4 179 77.7
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 4.6e-73 278.5 230 62.2
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 3.3e-71 272.3 227 63.0
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 3.3e-71 272.3 223 65.9
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 4.3e-71 271.9 233 62.7
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 2.2e-70 269.6 228 61.4
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 3.7e-70 268.9 200 69.5
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 3.7e-70 268.9 225 65.3
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 8.2e-70 267.7 230 60.9
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 8.2e-70 267.7 237 63.7
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 1.1e-69 267.3 228 61.0
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 3.4e-68 262.3 237 62.9
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 1.9e-66 256.5 235 62.1
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 2.5e-66 256.1 235 60.9
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 3.2e-66 255.8 225 58.2
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 9.4e-66 254.2 226 60.6
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 9.4e-66 254.2 229 61.1
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 2.1e-65 253.1 230 60.4
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 8.8e-64 247.7 239 55.6
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 2.0e-63 246.5 182 65.9
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 1.7e-62 243.4 228 58.8
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 2.8e-62 242.7 224 58.9
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 8.5e-59 231.1 182 66.5
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 2.5e-58 229.6 186 63.4
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 1.2e-57 227.3 167 67.7
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 6.1e-57 224.9 231 53.7
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 3.9e-56 222.2 232 58.2
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 5.7e-55 218.4 231 55.0
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 8.2e-54 214.5 232 51.3
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 2.4e-53 213.0 231 52.4
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 2.9e-51 206.1 139 74.1
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 3.6e-49 199.1 137 72.3
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 1.0e-48 197.6 140 69.3
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 1.7e-46 190.3 137 71.5
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 6.3e-46 188.3 138 68.1
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 3.2e-42 176.0 119 74.8
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 1.2e-41 174.1 227 48.5
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 4.7e-41 172.2 186 49.5
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 4.0e-40 169.1 181 48.1
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 2.8e-38 162.9 191 45.0
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 3.7e-38 162.5 95 76.8
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 4.5e-36 155.6 175 44.0
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 3.3e-34 149.4 229 43.2
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 1.0e-32 144.4 138 58.0
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 1.8e-32 143.7 135 57.0
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 9.8e-31 137.9 197 38.6
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 1.3e-30 137.5 156 46.2
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 1.9e-21 107.1 92 60.9
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 9.2e-21 104.8 94 63.8
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.9e-18 97.1 91 59.3
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 5.6e-18 95.5 57 77.2
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 4.9e-14 82.4 229 32.8
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 1.3e-11 74.3 177 27.1
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 4.3e-10 69.3 156 22.4
Cre03.g146167 Chlamydomonas reinhardtii HOM05D001304 ORTHO05D008890 2.6e-07 60.1 175 26.9


User provided reference genes

Program Settings