Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 0.0e+00 3104.7 1704 100.0
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 2.9e-87 328.6 1934 27.8
AUR62005538 Chenopodium quinoa HOM05D025851 ORTHO05D044019 8.0e-77 293.9 864 35.3
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 4.1e-65 255.0 975 31.9
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 4.6e-24 118.6 614 27.2
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.8e-15 90.1 91 40.7
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.3e-15 89.7 92 42.4
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.3e-15 89.7 111 42.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 3.0e-15 89.4 99 41.4
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.1e-15 88.6 92 42.4
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 8.7e-15 87.8 112 39.3
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.5e-14 87.0 92 42.4
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.9e-14 86.7 218 28.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.9e-14 86.7 81 46.9
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.9e-14 86.7 84 45.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.9e-14 86.7 88 40.9
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.3e-14 85.9 92 41.3
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 3.3e-14 85.9 90 43.3
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 4.3e-14 85.5 92 40.2
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 4.3e-14 85.5 82 42.7
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 4.3e-14 85.5 82 43.9
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 7.4e-14 84.7 95 40.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.3e-13 84.0 98 40.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 2.1e-13 83.2 88 40.9
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.8e-13 82.8 97 41.2
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 4.8e-13 82.0 135 31.1
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 4.8e-13 82.0 80 40.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 4.8e-13 82.0 89 38.2
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 6.2e-13 81.6 88 38.6
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 8.1e-13 81.3 179 29.6
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 8.1e-13 81.3 98 38.8
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.1e-12 80.9 154 34.4
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.8e-12 80.1 98 35.7
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.8e-12 80.1 92 38.0
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.4e-12 79.7 84 44.0
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.4e-12 79.7 88 36.4
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.4e-12 79.7 81 40.7
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 3.1e-12 79.3 84 42.9
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 3.1e-12 79.3 80 38.8
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 4.0e-12 79.0 88 46.6
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 6.9e-12 78.2 87 44.8
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 6.9e-12 78.2 84 44.0
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 9.0e-12 77.8 92 33.7
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.2e-11 77.4 90 41.1
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.5e-11 77.0 85 40.0
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 3.4e-11 75.9 94 40.4
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 4.5e-11 75.5 85 40.0
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 4.5e-11 75.5 97 37.1
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 4.5e-11 75.5 96 37.5
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.5e-11 75.5 85 42.4
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.8e-11 75.1 100 34.0
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.6e-11 74.7 87 36.8
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 7.6e-11 74.7 223 28.3
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.9e-11 74.3 75 44.0
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 9.9e-11 74.3 94 35.1
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 9.9e-11 74.3 95 32.6
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.9e-11 74.3 89 36.0
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.3e-10 73.9 96 34.4
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.7e-10 73.6 87 35.6
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 2.2e-10 73.2 95 38.9
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 2.2e-10 73.2 96 38.5
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.2e-10 73.2 96 38.5
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.2e-10 73.2 82 41.5
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 2.2e-10 73.2 108 34.3
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.9e-10 72.8 81 40.7
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.8e-10 72.4 85 41.2
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 4.9e-10 72.0 193 26.9
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 6.4e-10 71.6 93 38.7
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 6.4e-10 71.6 93 38.7
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 6.4e-10 71.6 84 35.7
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.4e-10 71.2 87 35.6
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 8.4e-10 71.2 97 36.1
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.1e-09 70.9 257 25.3
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.1e-09 70.9 375 24.8
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-09 70.5 83 39.8
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.9e-09 70.1 77 39.0
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.9e-09 70.1 78 42.3
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 2.4e-09 69.7 80 35.0
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 3.2e-09 69.3 107 35.5
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 3.2e-09 69.3 90 35.6
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 3.2e-09 69.3 199 29.1
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 3.2e-09 69.3 73 38.4
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 5.5e-09 68.6 91 36.3
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 5.5e-09 68.6 82 32.9
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 5.5e-09 68.6 83 37.3
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 5.5e-09 68.6 137 27.7
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 7.1e-09 68.2 85 32.9
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 7.1e-09 68.2 317 22.1
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 7.1e-09 68.2 88 34.1
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.3e-09 67.8 135 31.1
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 9.3e-09 67.8 77 42.9
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.2e-08 67.4 164 28.7
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.2e-08 67.4 178 28.7
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 2.1e-08 66.6 101 33.7
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 2.1e-08 66.6 124 29.0
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.1e-08 66.6 89 32.6
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 2.7e-08 66.2 74 39.2
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.5e-08 65.9 175 27.4
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 3.5e-08 65.9 211 30.8
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 4.6e-08 65.5 205 31.2
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 4.6e-08 65.5 93 41.9
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 6.0e-08 65.1 82 39.0
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 7.9e-08 64.7 94 36.2
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 7.9e-08 64.7 260 25.4
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.0e-07 64.3 77 35.1
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 1.0e-07 64.3 85 31.8
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 2.3e-07 63.2 98 29.6
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 2.3e-07 63.2 91 31.9
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.0e-07 62.8 67 40.3
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 3.9e-07 62.4 68 36.8
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 5.1e-07 62.0 80 35.0
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 6.7e-07 61.6 90 30.0
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 8.7e-07 61.2 359 23.7
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 8.7e-07 61.2 359 23.7
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 1.1e-06 60.8 86 31.4
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-06 60.5 251 23.1
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.5e-06 60.5 80 35.0
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.5e-06 60.5 80 35.0
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.5e-06 60.5 106 31.1
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.9e-06 60.1 363 22.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 2.5e-06 59.7 236 24.6
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 7.4e-06 58.2 64 34.4
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 9.6e-06 57.8 93 38.7


User provided reference genes

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