Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 7.0e-259 896.7 441 100.0
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.1e-198 696.8 447 75.4
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 9.6e-176 620.5 416 74.3
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 2.2e-172 609.4 382 77.0
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 1.5e-139 500.4 447 58.2
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 1.6e-138 496.9 446 57.8
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 2.7e-138 496.1 446 58.1
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 1.8e-137 493.4 448 58.0
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.6e-136 489.6 443 57.8
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 2.5e-131 473.0 447 56.4
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 2.5e-131 473.0 448 54.7
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 3.2e-131 472.6 454 54.8
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 9.4e-131 471.1 448 54.7
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 1.2e-130 470.7 447 56.2
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 6.1e-130 468.4 447 55.5
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.0e-129 467.6 453 54.1
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 2.3e-129 466.5 452 54.0
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 8.8e-129 464.5 448 55.4
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 8.8e-129 464.5 453 54.1
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 8.8e-129 464.5 453 54.1
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 7.5e-128 461.5 447 55.0
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 9.8e-128 461.1 451 54.1
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 2.8e-127 459.5 452 54.0
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 2.8e-127 459.5 448 55.8
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 2.8e-127 459.5 437 55.1
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 2.8e-127 459.5 406 57.6
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 6.3e-127 458.4 436 55.0
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 1.4e-126 457.2 406 58.4
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 3.1e-126 456.1 426 55.9
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 4.1e-126 455.7 457 54.0
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 7.0e-126 454.9 458 52.6
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 7.0e-126 454.9 457 54.3
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.6e-125 453.8 446 54.0
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 1.6e-125 453.8 418 54.8
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 2.0e-125 453.4 419 55.1
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 3.5e-125 452.6 440 55.2
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 4.5e-125 452.2 448 53.6
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 5.9e-125 451.8 452 52.9
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.0e-124 451.1 400 58.5
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.3e-124 450.7 414 56.8
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 2.3e-124 449.9 431 55.0
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 1.5e-123 447.2 439 53.3
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 3.3e-123 446.0 448 53.8
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.3e-123 446.0 432 53.7
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 4.2e-123 445.7 407 56.3
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 1.2e-122 444.1 427 53.4
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 1.0e-121 441.0 422 54.5
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 1.4e-121 440.7 408 55.4
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 1.8e-121 440.3 431 52.9
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 4.0e-121 439.1 402 56.0
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 5.2e-121 438.7 414 55.8
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 5.2e-121 438.7 444 53.2
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 5.2e-121 438.7 401 56.1
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 2.0e-120 436.8 415 54.5
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 5.7e-120 435.3 421 54.2
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 2.2e-119 433.3 436 52.8
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 3.7e-119 432.6 439 51.5
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 4.9e-119 432.2 437 51.7
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 8.3e-119 431.4 445 51.2
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 8.3e-119 431.4 402 55.7
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 1.1e-118 431.0 354 60.7
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 1.8e-118 430.3 404 54.7
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 1.6e-117 427.2 407 54.3
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 2.0e-117 426.8 438 52.5
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 3.5e-117 426.0 458 50.0
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 1.9e-115 420.2 433 52.2
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 1.9e-115 420.2 534 47.9
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 2.5e-115 419.9 402 54.5
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 3.6e-114 416.0 414 53.1
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 3.6e-114 416.0 410 53.9
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 1.0e-113 414.5 444 50.2
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 1.8e-113 413.7 412 51.7
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 1.8e-113 413.7 400 54.0
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 2.3e-113 413.3 397 54.9
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 3.1e-113 412.9 414 52.7
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 4.0e-113 412.5 433 51.5
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 5.2e-113 412.1 411 53.0
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 2.6e-112 409.8 435 51.0
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 2.6e-112 409.8 402 53.2
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 2.9e-111 406.4 310 68.1
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.2e-109 401.0 381 55.6
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 9.2e-102 374.8 398 51.5
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 6.6e-100 368.6 302 60.9
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 1.1e-99 367.9 402 51.0
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 2.0e-96 357.1 403 48.4
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 7.1e-94 348.6 377 51.2
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 1.2e-90 337.8 392 47.4
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.1e-89 334.7 389 50.4
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 3.1e-89 333.2 329 52.6
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 7.6e-88 328.6 407 44.7
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 2.2e-87 327.0 280 61.4
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 3.9e-84 316.2 278 57.9
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 1.1e-81 308.1 428 43.5
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.0e-73 279.6 405 40.7
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.9e-71 273.5 332 45.5
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 1.9e-70 270.8 266 54.1
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 8.7e-68 261.9 271 50.9
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 1.3e-50 204.9 240 45.0
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 1.1e-49 201.8 431 33.6
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.8e-49 201.1 360 35.8
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.4e-48 196.8 295 40.0
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 1.3e-47 194.9 403 34.5
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 2.5e-46 190.7 178 53.9
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 1.5e-43 181.4 137 62.8
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 2.1e-37 161.0 217 42.9
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.0e-36 158.7 181 46.4
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 8.2e-34 149.1 155 48.4
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.1e-33 146.7 146 49.3
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 9.1e-33 145.6 239 36.0
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.2e-32 145.2 149 48.3
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.7e-27 126.3 115 51.3
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.3e-26 125.2 269 32.7
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.3e-26 122.9 112 50.9
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 2.4e-25 120.9 129 47.3
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.2e-15 87.8 134 37.3
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 7.2e-14 82.8 348 26.4
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 5.2e-12 76.6 334 25.4
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 6.8e-12 76.3 333 24.6
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 6.8e-12 76.3 352 24.4
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 8.8e-12 75.9 350 26.3
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 8.8e-12 75.9 353 24.1
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 1.2e-11 75.5 353 24.1
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.5e-11 75.1 119 35.3
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 2.0e-11 74.7 333 25.8
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 3.4e-11 73.9 344 24.4
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 3.4e-11 73.9 352 24.1
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 3.4e-11 73.9 338 26.3
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 4.4e-11 73.6 342 26.0
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 4.4e-11 73.6 351 25.6
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 4.4e-11 73.6 351 25.6
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 5.7e-11 73.2 348 25.0
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 9.8e-11 72.4 336 24.4
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.3e-10 72.0 360 23.3
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.3e-10 72.0 328 25.3
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.7e-10 71.6 328 24.4
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.7e-10 71.6 333 25.2
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 1.7e-10 71.6 433 22.9
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.2e-10 71.2 344 24.7
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.8e-10 70.9 348 23.9
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 2.8e-10 70.9 352 23.0
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 4.9e-10 70.1 339 25.1
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 6.3e-10 69.7 333 22.8
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.3e-10 69.7 350 23.7
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 6.3e-10 69.7 339 25.1
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 6.3e-10 69.7 334 25.4
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 6.3e-10 69.7 333 24.9
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 8.3e-10 69.3 338 24.3
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 8.3e-10 69.3 339 25.1
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 8.3e-10 69.3 350 25.7
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 8.3e-10 69.3 354 24.3
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 1.1e-09 68.9 349 24.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.1e-09 68.9 44 65.9
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.1e-09 68.9 349 25.2
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 1.8e-09 68.2 361 23.5
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.8e-09 68.2 347 23.9
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.8e-09 68.2 335 24.5
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.4e-09 67.8 347 23.3
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 2.4e-09 67.8 357 24.9
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 3.1e-09 67.4 349 23.2
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 4.1e-09 67.0 338 24.6
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 4.1e-09 67.0 345 24.1
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 7.0e-09 66.2 350 24.0
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 9.2e-09 65.9 338 22.5
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 9.2e-09 65.9 340 25.0
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 1.2e-08 65.5 334 23.7
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 1.2e-08 65.5 333 24.3
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 4.5e-08 63.5 338 23.7
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 4.5e-08 63.5 338 24.3
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 5.9e-08 63.2 92 43.5
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 7.7e-08 62.8 337 23.4
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 2.9e-07 60.8 344 22.7
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.8e-07 60.5 340 23.8


User provided reference genes

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