Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As1g23086 Beta vulgaris HOM05D000081 ORTHO05D008417 1.8e-87 325.9 165 100.0
Ah.12g059930 Amaranthus hybridus HOM05D000081 ORTHO05D008417 1.7e-24 116.7 93 64.5
Lj1g0016246 Lotus japonicus HOM05D000081 ORTHO05D008417 1.4e-23 113.6 99 58.6
Atru.chr8.1995 Acer truncatum HOM05D000081 ORTHO05D008417 5.4e-23 111.7 162 44.4
Nn2g11153 Nelumbo nucifera HOM05D000081 ORTHO05D008417 1.2e-22 110.5 93 60.2
TWI74G1640 Tripterygium wilfordii HOM05D000081 ORTHO05D008417 1.2e-22 110.5 94 61.7
GSVIVG01034148001 Vitis vinifera HOM05D000081 ORTHO05D008417 1.2e-22 110.5 115 53.0
TAR633G0876 Trochodendron aralioides HOM05D000081 ORTHO05D008417 2.1e-22 109.8 96 58.3
Medtr7g062220 Medicago truncatula HOM05D000081 ORTHO05D008417 3.5e-22 109.0 112 53.6
Psat3g139280 Pisum sativum HOM05D000081 ORTHO05D008417 7.9e-22 107.8 170 43.5
QL07p048759 Quercus lobata HOM05D000081 ORTHO05D008417 7.9e-22 107.8 99 58.6
Ciclev10013616m.g Citrus clementina HOM05D000081 ORTHO05D008417 1.0e-21 107.5 160 43.1
Phvul.008G119400 Phaseolus vulgaris HOM05D000081 ORTHO05D008417 1.0e-21 107.5 157 44.6
Prupe.6G257500 Prunus persica HOM05D000081 ORTHO05D008417 1.0e-21 107.5 106 58.5
Manes.08G084300 Manihot esculenta HOM05D000081 ORTHO05D008417 1.3e-21 107.1 114 51.8
Sabra06G0066400 Salix brachista HOM05D000081 ORTHO05D008417 1.3e-21 107.1 114 54.4
Glyma.07G133700 Glycine max HOM05D000081 ORTHO05D008417 2.3e-21 106.3 92 62.0
Nn2g13394 Nelumbo nucifera HOM05D000081 ORTHO05D008417 2.3e-21 106.3 95 58.9
Thecc.05G037200 Theobroma cacao HOM05D000081 ORTHO05D008417 2.3e-21 106.3 114 51.8
FvH4_6g13470 Fragaria vesca HOM05D000081 ORTHO05D008417 3.0e-21 105.9 111 52.3
FAN14G2222 Fragaria x ananassa HOM05D000081 ORTHO05D008417 3.0e-21 105.9 111 52.3
Lalb_Chr01g0022561 Lupinus albus HOM05D000081 ORTHO05D008417 3.0e-21 105.9 118 50.8
RcHm_v2.0_Chr3g0466341 Rosa chinensis HOM05D000081 ORTHO05D008417 3.9e-21 105.5 111 52.3
TPR.G40440 Trifolium pratense HOM05D000081 ORTHO05D008417 3.9e-21 105.5 106 54.7
Duzib106G0090 Durio zibethinus HOM05D000081 ORTHO05D008417 6.7e-21 104.8 114 53.5
arahy.Tifrunner.gnm1.ann1.CJ9CGG Arachis hypogaea HOM05D000081 ORTHO05D008417 8.7e-21 104.4 158 43.0
COL.COLO4_14779 Corchorus olitorius HOM05D000181 ORTHO05D003134 8.7e-21 104.4 99 57.6
FAN05G3265 Fragaria x ananassa HOM05D000081 ORTHO05D008417 8.7e-21 104.4 111 51.4
FAN09G1616 Fragaria x ananassa HOM05D000081 ORTHO05D008417 8.7e-21 104.4 111 51.4
Glyma.18G183100 Glycine max HOM05D000081 ORTHO05D008417 8.7e-21 104.4 90 60.0
Dinv37159 Davidia involucrata HOM05D000081 ORTHO05D008417 1.1e-20 104.0 90 62.2
VMungo1383G0693 Vigna mungo HOM05D000081 ORTHO05D008417 1.1e-20 104.0 170 41.2
Haze_20816 Corylus avellana HOM05D000081 ORTHO05D008417 2.5e-20 102.8 110 53.6
TAR623G0585 Trochodendron aralioides HOM05D000081 ORTHO05D008417 2.5e-20 102.8 94 59.6
Cfa017357 Carpinus fangiana HOM05D000081 ORTHO05D008417 3.3e-20 102.4 100 56.0
MBI05_g46007_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D008417 5.6e-20 101.7 92 57.6
MD04G1131000 Malus domestica HOM05D000081 ORTHO05D008417 5.6e-20 101.7 111 55.0
Actinidia05321 Actinidia chinensis HOM05D000081 ORTHO05D008417 7.4e-20 101.3 88 59.1
FAN02G1604 Fragaria x ananassa HOM05D000081 ORTHO05D008417 9.6e-20 100.9 111 50.5
MD12G1144100 Malus domestica HOM05D000081 ORTHO05D008417 9.6e-20 100.9 111 55.0
Gohir.A04G083200 Gossypium hirsutum HOM05D000081 ORTHO05D008417 1.3e-19 100.5 113 51.3
Rhsim04G0158500 Rhododendron simsii HOM05D000081 ORTHO05D008417 1.3e-19 100.5 86 60.5
TAR369G0297 Trochodendron aralioides HOM05D000081 ORTHO05D008417 1.3e-19 100.5 85 58.8
Cc06_g02490 Coffea canephora HOM05D000081 ORTHO05D008417 1.6e-19 100.1 113 50.4
Gohir.D04G121900 Gossypium hirsutum HOM05D000081 ORTHO05D008417 2.1e-19 99.8 113 51.3
Gorai.012G104800 Gossypium raimondii HOM05D000081 ORTHO05D008417 2.1e-19 99.8 113 51.3
CiPaw.09G194700 Carya illinoinensis HOM05D000081 ORTHO05D008417 2.8e-19 99.4 116 46.6
Duzib128G0900 Durio zibethinus HOM05D000081 ORTHO05D008417 2.8e-19 99.4 104 54.8
arahy.Tifrunner.gnm1.ann1.UJY589 Arachis hypogaea HOM05D000081 ORTHO05D008417 3.6e-19 99.0 117 47.0
Potri.006G087000 Populus trichocarpa HOM05D000081 ORTHO05D008417 3.6e-19 99.0 114 51.8
Hma1.2p1_0936F.1_g238870 Hydrangea macrophylla HOM05D000081 ORTHO05D008417 4.8e-19 98.6 87 59.8
PSO063G0390 Papaver somniferum HOM05D000081 ORTHO05D008417 1.1e-18 97.4 180 38.3
PSO339G6317 Papaver somniferum HOM05D000081 ORTHO05D008417 3.1e-18 95.9 163 39.9
Eucgr.K03115 Eucalyptus grandis HOM05D000081 ORTHO05D008417 5.3e-18 95.1 109 47.7
CANSAT11G0955 Cannabis sativa HOM05D000081 ORTHO05D008417 6.9e-18 94.7 118 49.2
Lsat_1_v5_gn_9_33061 Lactuca sativa HOM05D000081 ORTHO05D008417 6.9e-18 94.7 110 49.1
THA.LOC104827022 Tarenaya hassleriana HOM05D000081 ORTHO05D008417 6.9e-18 94.7 108 49.1
HanXRQChr16g0499001 Helianthus annuus HOM05D000081 ORTHO05D008417 2.6e-17 92.8 96 53.1
PGR004G2790 Punica granatum HOM05D000081 ORTHO05D008417 2.6e-17 92.8 110 49.1
SGA_v2.0_scaffold126G33773 Striga asiatica HOM05D000081 ORTHO05D008417 3.4e-17 92.4 93 51.6
MBI05_g29696_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D008417 7.6e-17 91.3 102 52.0
Os01g0972800 Oryza sativa ssp. japonica HOM05D000081 ORTHO05D008417 1.7e-16 90.1 106 54.7
Aqoxy2G02261 Aquilegia oxysepala HOM05D000081 ORTHO05D008417 2.2e-16 89.7 117 47.9
vmacro08644 Vaccinium macrocarpon HOM05D000081 ORTHO05D008417 2.2e-16 89.7 97 53.6
Potri.016G099900 Populus trichocarpa HOM05D000081 ORTHO05D008417 2.9e-16 89.4 117 47.9
ATR0559G094 Amborella trichopoda HOM05D000081 ORTHO05D008417 4.9e-16 88.6 95 50.5
Zm00001eb139800 Zea mays HOM05D000081 ORTHO05D008417 8.4e-16 87.8 99 55.6
Gorai.006G171700 Gossypium raimondii HOM05D000081 ORTHO05D008417 1.4e-15 87.0 90 53.3
Nitab4.5_0008284g0010 Nicotiana tabacum HOM05D000081 ORTHO05D008417 1.9e-15 86.7 118 48.3
Cpa.g.sc169.18 Carica papaya HOM05D000081 ORTHO05D008417 2.4e-15 86.3 105 46.7
HPP92_012598 Vanilla planifolia HOM05D000081 ORTHO05D008417 2.4e-15 86.3 91 48.4
CsaV3_4G025110 Cucumis sativus L. HOM05D000081 ORTHO05D008417 5.5e-15 85.1 112 46.4
Thhalv10003250m.g Eutrema salsugineum HOM05D000081 ORTHO05D008417 5.5e-15 85.1 89 50.6
Gohir.A09G154900 Gossypium hirsutum HOM05D000081 ORTHO05D008417 7.1e-15 84.7 90 51.1
Gohir.D09G150400 Gossypium hirsutum HOM05D000081 ORTHO05D008417 9.3e-15 84.3 81 55.6
Sc20g0005020 Simmondsia chinensis HOM05D000081 ORTHO05D008417 9.3e-15 84.3 84 52.4
CSS0026457 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D008417 1.6e-14 83.6 165 35.8
AT5G43290 Arabidopsis thaliana HOM05D000081 ORTHO05D008417 2.7e-14 82.8 89 47.2
AL8G17120 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 4.6e-14 82.0 89 50.6
AL97U10020 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 4.6e-14 82.0 89 50.6
ECA247G0532 Erigeron canadensis HOM05D000081 ORTHO05D008417 4.6e-14 82.0 108 46.3
Sp2g08100 Schrenkiella parvula HOM05D000081 ORTHO05D008417 6.0e-14 81.6 89 51.7
Nitab4.5_0000705g0150 Nicotiana tabacum HOM05D000081 ORTHO05D008417 7.9e-14 81.3 118 46.6
MELO3C003140.2 Cucumis melo HOM05D000081 ORTHO05D008417 1.3e-13 80.5 110 44.5
Oeu001862.1 Olea europaea HOM05D000181 ORTHO05D003134 3.0e-13 79.3 162 35.8
HPP92_006624 Vanilla planifolia HOM05D000081 ORTHO05D008417 5.1e-13 78.6 85 49.4
TPR.G1686 Trifolium pratense HOM05D000081 ORTHO05D008417 6.7e-13 78.2 53 66.0
MSTRG.5653 Avicennia marina HOM05D000081 ORTHO05D008417 1.5e-12 77.0 96 45.8
Os01g0842801 Oryza sativa ssp. japonica HOM05D000081 ORTHO05D008417 1.5e-12 77.0 88 46.6
Migut.J00318 Erythranthe guttata HOM05D000081 ORTHO05D008417 1.9e-12 76.6 124 45.2
AL8G17140 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 3.3e-12 75.9 106 42.5
AL8G17150 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 3.3e-12 75.9 106 42.5
AL97U10010 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 3.3e-12 75.9 106 42.5
Sopen09g005680 Solanum pennellii HOM05D000081 ORTHO05D008417 5.6e-12 75.1 112 43.8
BcaC04g21933 Brassica carinata HOM05D000081 ORTHO05D008417 7.4e-12 74.7 91 44.0
BcaNung06845 Brassica carinata HOM05D000081 ORTHO05D008417 7.4e-12 74.7 91 44.0
C09p25680 Brassica napus HOM05D000081 ORTHO05D008417 7.4e-12 74.7 91 44.0
BolC9t55471H Brassica oleracea HOM05D000081 ORTHO05D008417 7.4e-12 74.7 91 44.0
CiPaw.10G146700 Carya illinoinensis HOM05D000081 ORTHO05D008417 7.4e-12 74.7 91 49.5
A09p20260 Brassica napus HOM05D000081 ORTHO05D008417 9.6e-12 74.3 78 52.6
CAN.G1293.3 Capsicum annuum HOM05D000081 ORTHO05D008417 9.6e-12 74.3 115 40.9
Solyc09g010960.3 Solanum lycopersicum HOM05D000081 ORTHO05D008417 9.6e-12 74.3 112 42.9
Peaxi162Scf00165g00815 Petunia axillaris HOM05D000081 ORTHO05D008417 2.1e-11 73.2 118 44.9
Aa31LG9G13390 Aethionema arabicum HOM05D000081 ORTHO05D008417 4.8e-11 72.0 107 43.9
CARHR180440 Cardamine hirsuta HOM05D000081 ORTHO05D008417 4.8e-11 72.0 82 45.1
DCAR_028753 Daucus carota HOM05D000081 ORTHO05D008417 4.8e-11 72.0 113 39.8
Zm00001eb367920 Zea mays HOM05D000081 ORTHO05D008417 4.8e-11 72.0 95 45.3
Carub.0008s0537 Capsella rubella HOM05D000081 ORTHO05D008417 6.2e-11 71.6 57 54.4
Haze_20730 Corylus avellana HOM05D000081 ORTHO05D008417 5.3e-10 68.6 103 45.6
Oeu038420.1 Olea europaea HOM05D000081 ORTHO05D008417 9.0e-10 67.8 113 40.7
BcaC04g21934 Brassica carinata HOM05D000081 ORTHO05D008417 1.5e-09 67.0 56 55.4
Zm00001eb148260 Zea mays HOM05D000081 ORTHO05D008417 2.6e-09 66.2 94 42.6
SEGI_17068 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 3.4e-09 65.9 134 33.6
Sed0001321 Sechium edule HOM05D000081 ORTHO05D008417 5.8e-09 65.1 50 62.0
SEGI_14924 Sequoiadendron giganteum HOM05D000081 ORTHO05D000036 6.5e-08 61.6 87 39.1
SEGI_28147 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 1.6e-06 57.0 200 27.0
A02p33400 Brassica napus HOM05D000081 ORTHO05D000036 2.7e-06 56.2 128 32.8
BcaC03g17210 Brassica carinata HOM05D000081 ORTHO05D000036 3.5e-06 55.8 108 35.2
Zm00001eb154960 Zea mays HOM05D000081 ORTHO05D000036 3.5e-06 55.8 42 52.4
HanXRQChr09g0248011 Helianthus annuus HOM05D000081 ORTHO05D000036 6.0e-06 55.1 96 39.6
Gohir.D04G035800 Gossypium hirsutum HOM05D000081 ORTHO05D000036 7.9e-06 54.7 48 50.0


User provided reference genes

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