Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 7.3e-46 186.8 91 100.0
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 5.5e-17 90.9 49 85.7
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 6.1e-16 87.4 57 71.9
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 6.1e-16 87.4 57 71.9
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 6.1e-16 87.4 57 71.9
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 6.1e-16 87.4 49 79.6
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 7.9e-16 87.0 49 81.6
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 7.9e-16 87.0 49 79.6
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.0e-15 86.7 57 71.9
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 1.4e-15 86.3 57 70.2
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-15 86.3 57 70.2
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.8e-15 85.9 49 79.6
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.8e-15 85.9 49 79.6
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 3.0e-15 85.1 48 79.2
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.0e-15 85.1 57 68.4
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 3.0e-15 85.1 57 68.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 3.9e-15 84.7 48 79.2
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 3.9e-15 84.7 49 77.6
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.9e-15 84.7 52 75.0
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.9e-15 84.7 57 66.7
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 3.9e-15 84.7 48 79.2
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 5.1e-15 84.3 48 75.0
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 5.1e-15 84.3 48 77.1
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 5.1e-15 84.3 48 77.1
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 5.1e-15 84.3 57 68.4
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.1e-15 84.3 48 79.2
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 6.7e-15 84.0 49 77.6
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 6.7e-15 84.0 48 75.0
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 8.8e-15 83.6 48 77.1
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.8e-15 83.6 48 77.1
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 8.8e-15 83.6 48 77.1
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 8.8e-15 83.6 49 75.5
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.1e-14 83.2 57 66.7
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 1.5e-14 82.8 48 77.1
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.5e-14 82.8 48 77.1
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.5e-14 82.8 48 77.1
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.5e-14 82.8 57 66.7
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.9e-14 82.4 48 75.0
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.9e-14 82.4 49 75.5
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 1.9e-14 82.4 48 77.1
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.9e-14 82.4 48 77.1
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.9e-14 82.4 48 77.1
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.9e-14 82.4 48 77.1
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.9e-14 82.4 48 77.1
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.5e-14 82.0 48 77.1
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.5e-14 82.0 57 64.9
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 2.5e-14 82.0 48 77.1
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.5e-14 82.0 49 73.5
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.5e-14 82.0 48 77.1
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 3.3e-14 81.6 48 77.1
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.3e-14 81.6 48 75.0
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 3.3e-14 81.6 49 71.4
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 3.3e-14 81.6 48 77.1
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.3e-14 81.6 48 72.9
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 4.3e-14 81.3 48 75.0
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 4.3e-14 81.3 48 75.0
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 4.3e-14 81.3 48 77.1
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.3e-14 81.3 49 71.4
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 5.7e-14 80.9 48 70.8
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 5.7e-14 80.9 48 75.0
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 5.7e-14 80.9 48 75.0
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 5.7e-14 80.9 48 77.1
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 5.7e-14 80.9 48 75.0
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 7.4e-14 80.5 48 75.0
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 7.4e-14 80.5 49 71.4
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 9.7e-14 80.1 49 75.5
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 9.7e-14 80.1 48 75.0
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 9.7e-14 80.1 57 63.2
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.3e-13 79.7 48 72.9
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 1.7e-13 79.3 48 75.0
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.7e-13 79.3 48 77.1
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.7e-13 79.3 48 75.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 1.7e-13 79.3 48 75.0
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.7e-13 79.3 48 75.0
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 2.2e-13 79.0 48 75.0
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.8e-13 78.6 48 75.0
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.8e-13 78.6 57 64.9
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.8e-13 78.6 48 77.1
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 2.8e-13 78.6 48 75.0
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.8e-13 78.6 48 75.0
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.8e-13 78.6 48 70.8
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 3.7e-13 78.2 57 61.4
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.7e-13 78.2 57 64.9
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 4.8e-13 77.8 49 71.4
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.2e-13 77.0 48 70.8
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.8e-12 75.9 57 61.4
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.4e-12 75.5 48 72.9
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 2.4e-12 75.5 52 69.2
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 3.1e-12 75.1 48 66.7
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.1e-12 74.7 54 61.1
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.1e-12 74.7 57 59.6
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.3e-12 74.3 57 61.4
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 6.9e-12 73.9 47 70.2
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 6.9e-12 73.9 57 64.9
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 9.1e-12 73.6 48 70.8
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 9.1e-12 73.6 48 66.7
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.5e-11 72.8 57 59.6
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.5e-11 72.8 48 68.8
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.0e-11 72.4 49 67.3
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 2.0e-11 72.4 49 69.4
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 2.0e-11 72.4 49 67.3
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.0e-11 72.4 49 69.4
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.6e-11 72.0 52 61.5
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.6e-11 72.0 52 61.5
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.6e-11 72.0 49 63.3
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.6e-11 72.0 49 65.3
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 3.4e-11 71.6 48 64.6
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 4.5e-11 71.2 52 59.6
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 4.5e-11 71.2 57 57.9
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 5.9e-11 70.9 49 65.3
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.9e-11 70.9 49 61.2
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 7.7e-11 70.5 47 66.0
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.0e-10 70.1 37 78.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.0e-10 70.1 49 61.2
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.0e-10 70.1 48 64.6
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.7e-10 69.3 48 62.5
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.7e-10 69.3 44 70.5
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.7e-10 69.3 48 62.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.2e-10 68.9 48 66.7
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 2.2e-10 68.9 68 52.9
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.8e-10 68.2 57 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.8e-10 68.2 48 66.7
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 6.5e-10 67.4 59 57.6
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 8.5e-10 67.0 40 72.5
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.1e-09 66.6 50 66.0
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.4e-09 66.2 51 58.8
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 1.9e-09 65.9 49 57.1
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.9e-09 65.9 49 59.2
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.9e-09 65.9 49 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.5e-09 65.5 48 60.4
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 3.2e-09 65.1 49 57.1
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.2e-09 65.1 49 57.1
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 5.5e-09 64.3 45 60.0
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 9.4e-09 63.5 41 65.9
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 1.2e-08 63.2 41 61.0
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.2e-08 63.2 57 54.4
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.6e-08 62.8 49 55.1
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 2.1e-08 62.4 46 54.3
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 2.1e-08 62.4 46 54.3
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 3.6e-08 61.6 49 59.2
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.4e-07 59.7 49 57.1
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.4e-07 59.7 48 52.1
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.8e-07 59.3 75 45.3
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 3.9e-07 58.2 47 48.9
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.9e-07 58.2 36 63.9
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 6.7e-07 57.4 49 59.2
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 2.0e-06 55.8 37 67.6


User provided reference genes

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