Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 1.2e-42 176.0 87 100.0
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 3.4e-32 141.4 84 83.3
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 5.1e-28 127.5 70 85.7
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 3.3e-27 124.8 71 84.5
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 7.3e-27 123.6 70 84.3
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 2.8e-26 121.7 82 74.4
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 2.8e-26 121.7 70 81.4
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.8e-25 119.0 66 86.4
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 1.8e-25 119.0 66 86.4
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 1.8e-25 119.0 72 77.8
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 3.1e-25 118.2 70 77.1
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 3.1e-25 118.2 66 83.3
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 3.1e-25 118.2 66 84.8
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 4.0e-25 117.9 66 83.3
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 4.0e-25 117.9 72 80.6
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 6.8e-25 117.1 66 81.8
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 6.8e-25 117.1 66 81.8
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 6.8e-25 117.1 66 86.4
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 6.8e-25 117.1 66 84.8
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 6.8e-25 117.1 66 81.8
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 6.8e-25 117.1 66 77.3
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 8.9e-25 116.7 85 71.8
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 8.9e-25 116.7 66 81.8
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 8.9e-25 116.7 66 81.8
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 8.9e-25 116.7 66 81.8
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 1.5e-24 115.9 66 83.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.0e-24 115.5 66 83.3
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.4e-24 114.8 66 81.8
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 3.4e-24 114.8 71 80.3
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 3.4e-24 114.8 66 83.3
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 3.4e-24 114.8 66 83.3
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 3.4e-24 114.8 66 83.3
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 3.4e-24 114.8 66 81.8
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 3.4e-24 114.8 66 81.8
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 4.4e-24 114.4 70 77.1
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 4.4e-24 114.4 66 77.3
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 9.9e-24 113.2 66 80.3
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 9.9e-24 113.2 66 81.8
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 9.9e-24 113.2 66 78.8
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.3e-23 112.8 66 74.2
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.3e-23 112.8 66 80.3
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 1.3e-23 112.8 66 80.3
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 1.7e-23 112.5 66 80.3
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.7e-23 112.5 66 81.8
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.7e-23 112.5 66 81.8
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 1.7e-23 112.5 66 78.8
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.2e-23 112.1 66 81.8
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.2e-23 112.1 66 81.8
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 2.2e-23 112.1 66 80.3
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.2e-23 112.1 66 75.8
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.2e-23 112.1 74 68.9
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 2.2e-23 112.1 66 78.8
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 2.9e-23 111.7 71 76.1
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 4.9e-23 110.9 66 77.3
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 4.9e-23 110.9 66 77.3
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 6.4e-23 110.5 66 72.7
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 8.3e-23 110.2 87 59.8
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.1e-22 109.8 80 70.0
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 1.1e-22 109.8 66 80.3
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 1.1e-22 109.8 66 78.8
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 1.1e-22 109.8 71 76.1
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 1.1e-22 109.8 66 72.7
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 1.4e-22 109.4 66 80.3
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 1.4e-22 109.4 66 78.8
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.4e-22 109.4 77 67.5
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.4e-22 109.4 66 71.2
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 1.4e-22 109.4 66 78.8
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.9e-22 109.0 70 75.7
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 1.9e-22 109.0 69 73.9
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 1.9e-22 109.0 70 71.4
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 2.4e-22 108.6 66 77.3
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 2.4e-22 108.6 66 80.3
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.4e-22 108.6 69 75.4
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 2.4e-22 108.6 66 74.2
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 2.4e-22 108.6 66 77.3
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 2.4e-22 108.6 70 75.7
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 2.4e-22 108.6 71 76.1
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 2.4e-22 108.6 66 78.8
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 2.4e-22 108.6 70 72.9
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 2.4e-22 108.6 66 77.3
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 3.2e-22 108.2 66 72.7
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 3.2e-22 108.2 66 75.8
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 3.2e-22 108.2 66 75.8
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 3.2e-22 108.2 66 75.8
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 3.2e-22 108.2 66 69.7
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.2e-22 108.2 66 77.3
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 3.2e-22 108.2 70 72.9
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 4.1e-22 107.8 77 70.1
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 4.1e-22 107.8 66 77.3
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 5.4e-22 107.5 66 75.8
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 5.4e-22 107.5 66 74.2
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 5.4e-22 107.5 66 75.8
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 5.4e-22 107.5 66 75.8
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 5.4e-22 107.5 70 75.7
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 5.4e-22 107.5 65 76.9
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 5.4e-22 107.5 66 75.8
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 7.1e-22 107.1 72 70.8
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 7.1e-22 107.1 70 74.3
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.1e-22 107.1 66 80.3
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 7.1e-22 107.1 66 77.3
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 7.1e-22 107.1 66 74.2
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 7.1e-22 107.1 66 71.2
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 7.1e-22 107.1 66 75.8
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 7.1e-22 107.1 66 78.8
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 9.2e-22 106.7 70 70.0
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 9.2e-22 106.7 66 75.8
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 9.2e-22 106.7 69 68.1
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 1.2e-21 106.3 66 74.2
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 1.2e-21 106.3 66 74.2
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 1.6e-21 105.9 66 75.8
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 1.6e-21 105.9 72 69.4
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 1.6e-21 105.9 66 75.8
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 1.6e-21 105.9 66 71.2
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 1.6e-21 105.9 70 74.3
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 78.8
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 72.7
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 2.1e-21 105.5 66 75.8
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.7e-21 105.1 64 75.0
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 4.6e-21 104.4 66 72.7
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 4.6e-21 104.4 66 72.7
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 4.6e-21 104.4 66 72.7
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 6.0e-21 104.0 66 72.7
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 1.0e-20 103.2 66 74.2
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 1.7e-20 102.4 66 74.2
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.3e-20 102.1 66 75.8
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.3e-20 102.1 66 75.8
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.3e-20 102.1 66 75.8
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 2.3e-20 102.1 66 72.7
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 2.3e-20 102.1 66 71.2
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 3.9e-20 101.3 66 71.2
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 3.9e-20 101.3 66 71.2
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 8.6e-20 100.1 66 71.2
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.1e-19 99.8 66 68.2
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 1.1e-19 99.8 66 68.2
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 1.5e-19 99.4 66 71.2
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.5e-19 99.4 66 78.8
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 2.5e-19 98.6 74 66.2
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 3.3e-19 98.2 81 61.7
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 1.6e-18 95.9 70 67.1
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 8.1e-18 93.6 58 75.9
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 1.4e-17 92.8 64 70.3
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.8e-17 92.4 60 70.0
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 2.6e-16 88.6 50 86.0
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 5.8e-16 87.4 50 82.0
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 3.8e-15 84.7 49 77.6
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 8.4e-15 83.6 60 68.3
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 1.4e-14 82.8 52 75.0
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 1.9e-14 82.4 50 76.0
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 2.4e-14 82.0 50 74.0
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 3.2e-14 81.6 71 59.2
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.2e-14 81.6 50 70.0
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 1.2e-13 79.7 50 70.0
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.6e-13 79.3 50 76.0
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 2.7e-13 78.6 50 70.0
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 3.5e-13 78.2 57 71.9
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 3.3e-11 71.6 59 49.2
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 4.3e-11 71.2 53 62.3
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 9.6e-11 70.1 50 68.0
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 2.1e-10 68.9 50 66.0
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 2.4e-09 65.5 56 50.0
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 4.0e-09 64.7 47 66.0
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 4.0e-09 64.7 66 53.0
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 3.2e-06 55.1 36 69.4
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 3.2e-06 55.1 36 69.4
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 3.2e-06 55.1 36 69.4
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 4.2e-06 54.7 33 66.7
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 9.3e-06 53.5 36 66.7


User provided reference genes

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