Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.1e-220 769.6 384 100.0
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 4.5e-145 518.5 316 80.7
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.1e-134 483.0 291 82.5
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.0e-125 452.2 285 76.5
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 4.0e-117 425.6 383 59.5
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.7e-115 420.2 379 59.9
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 3.7e-115 419.1 387 58.4
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.7e-115 419.1 379 59.9
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 9.1e-114 414.5 382 58.4
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 4.5e-113 412.1 379 59.6
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.2e-110 404.1 308 66.9
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.1e-110 403.3 324 63.9
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 1.0e-109 401.0 308 66.6
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 6.8e-109 398.3 365 58.1
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 8.8e-109 397.9 364 58.0
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 2.0e-108 396.7 387 56.1
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 2.6e-108 396.4 385 56.1
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 4.4e-108 395.6 331 61.0
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 4.4e-108 395.6 310 66.5
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 5.7e-108 395.2 385 57.7
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 2.2e-107 393.3 343 62.1
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 2.2e-107 393.3 365 57.5
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.8e-107 392.9 288 68.1
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 3.7e-107 392.5 292 66.8
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.1e-106 389.0 306 64.4
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 7.0e-106 388.3 378 56.6
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 7.0e-106 388.3 312 65.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.6e-105 387.1 380 56.8
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.0e-105 386.7 378 55.6
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 2.0e-105 386.7 280 68.6
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 4.5e-105 385.6 380 55.3
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.7e-104 383.6 382 56.8
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.3e-104 383.3 378 56.6
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 3.8e-104 382.5 378 55.3
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 3.8e-104 382.5 312 63.5
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 5.0e-104 382.1 338 57.7
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 8.6e-104 381.3 302 64.6
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.1e-103 380.9 294 65.6
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 1.1e-103 380.9 289 66.4
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.5e-103 380.6 308 61.7
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 1.9e-103 380.2 308 61.7
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 2.5e-103 379.8 379 55.7
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 1.2e-102 377.5 336 58.0
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.2e-102 377.5 310 62.6
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.6e-102 377.1 336 59.8
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.8e-102 376.3 352 57.1
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.6e-102 375.9 341 59.5
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 4.7e-102 375.6 307 63.5
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 6.1e-102 375.2 290 63.8
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 8.0e-102 374.8 334 58.4
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.0e-101 374.4 289 65.7
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.8e-101 373.6 397 52.1
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.8e-101 373.6 269 66.9
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 4.0e-101 372.5 306 61.8
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 4.0e-101 372.5 302 63.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 5.2e-101 372.1 386 55.4
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 6.8e-101 371.7 379 56.2
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 6.8e-101 371.7 363 56.7
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 8.9e-101 371.3 381 53.3
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.0e-100 370.2 293 63.5
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 2.0e-100 370.2 297 62.3
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 3.4e-100 369.4 297 63.0
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 7.5e-100 368.2 379 53.3
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 7.5e-100 368.2 359 55.7
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.3e-99 367.5 296 62.8
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.3e-99 367.5 272 66.2
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.3e-99 367.5 383 54.6
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.7e-99 367.1 383 53.8
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.7e-99 367.1 386 53.4
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 2.9e-99 366.3 303 62.4
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 4.9e-99 365.5 298 63.1
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.4e-98 364.0 290 62.4
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 1.8e-98 363.6 382 54.2
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.4e-98 363.2 341 57.8
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.4e-98 363.2 385 53.2
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 3.2e-98 362.8 382 53.9
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 3.2e-98 362.8 382 53.9
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 3.2e-98 362.8 384 52.6
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 9.2e-98 361.3 360 56.1
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.2e-97 360.9 383 53.3
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 3.5e-97 359.4 287 62.0
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 3.5e-97 359.4 290 62.1
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 5.9e-97 358.6 288 61.8
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 7.8e-97 358.2 339 57.5
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.3e-96 357.5 292 61.3
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 6.6e-96 355.1 308 60.1
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.5e-95 354.0 419 49.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.5e-95 354.0 329 57.8
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.9e-95 353.6 399 51.6
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 2.8e-94 349.7 274 62.4
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.4e-93 347.4 294 61.6
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.2e-93 345.5 385 50.9
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 5.2e-93 345.5 304 58.2
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 6.8e-93 345.1 246 68.3
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 3.0e-88 329.7 273 60.4
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 6.6e-88 328.6 318 56.9
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 6.6e-88 328.6 301 57.8
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.5e-87 327.4 308 57.8
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 9.5e-87 324.7 276 56.9
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 6.8e-85 318.5 342 52.3
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 6.8e-85 318.5 362 49.7
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.0e-84 317.0 382 47.6
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.3e-83 314.3 321 53.3
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.2e-83 313.5 257 63.0
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 3.2e-82 309.7 277 53.8
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.1e-82 309.3 238 65.1
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.2e-81 307.8 235 63.0
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 3.9e-80 302.8 217 68.2
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 6.6e-80 302.0 278 54.7
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 9.5e-79 298.1 276 55.8
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 1.5e-76 290.8 224 65.2
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 8.6e-72 275.0 284 52.5
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.2e-70 271.2 174 74.7
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 2.8e-70 270.0 230 61.3
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.6e-70 269.6 232 56.5
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 2.1e-62 243.8 272 47.8
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.6e-62 243.0 271 46.5
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.2e-59 233.8 190 57.9
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 8.7e-56 221.9 302 44.4
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.6e-41 174.5 251 39.8
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 3.0e-40 170.2 145 66.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 8.7e-40 168.7 188 47.9
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 4.8e-38 162.9 161 55.9
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 2.3e-24 117.5 337 29.7
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 5.9e-20 102.8 111 53.2
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 5.9e-20 102.8 71 67.6
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 4.1e-13 80.1 84 52.4
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 5.9e-12 76.3 52 71.2


User provided reference genes

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