Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 2.5e-77 292.0 143 100.0
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 8.6e-17 90.9 44 95.5
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 8.6e-17 90.9 44 93.2
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 8.6e-17 90.9 44 93.2
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 8.6e-17 90.9 44 93.2
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 8.6e-17 90.9 44 93.2
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 8.6e-17 90.9 44 93.2
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 93.2
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 90.9
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 90.9
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 90.9
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 90.9
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 93.2
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 90.9
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 1.1e-16 90.5 44 90.9
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 1.5e-16 90.1 44 93.2
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 1.5e-16 90.1 44 97.7
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 90.9
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 90.9
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.9e-16 89.7 48 85.4
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 93.2
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 93.2
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 90.9
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 90.9
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 95.5
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 1.9e-16 89.7 44 90.9
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 2.5e-16 89.4 44 90.9
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 2.5e-16 89.4 44 90.9
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 2.5e-16 89.4 44 90.9
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 2.5e-16 89.4 44 90.9
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 3.3e-16 89.0 44 93.2
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 4.3e-16 88.6 44 93.2
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 4.3e-16 88.6 44 90.9
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 4.3e-16 88.6 44 90.9
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 5.6e-16 88.2 44 93.2
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 5.6e-16 88.2 44 90.9
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 5.6e-16 88.2 44 90.9
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 5.6e-16 88.2 44 93.2
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 5.6e-16 88.2 44 88.6
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 7.3e-16 87.8 44 93.2
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 7.3e-16 87.8 44 86.4
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 7.3e-16 87.8 44 90.9
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 7.3e-16 87.8 44 93.2
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 9.5e-16 87.4 44 88.6
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 9.5e-16 87.4 44 93.2
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 1.2e-15 87.0 44 86.4
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 1.2e-15 87.0 44 86.4
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 1.2e-15 87.0 44 86.4
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 1.2e-15 87.0 44 86.4
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 1.2e-15 87.0 44 90.9
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 1.6e-15 86.7 44 88.6
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 2.1e-15 86.3 44 90.9
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 2.1e-15 86.3 44 88.6
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.8e-15 85.9 44 93.2
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 2.8e-15 85.9 44 88.6
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 2.8e-15 85.9 44 90.9
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 4.7e-15 85.1 44 86.4
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 4.7e-15 85.1 44 93.2
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 4.7e-15 85.1 44 90.9
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 4.7e-15 85.1 44 90.9
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 6.2e-15 84.7 44 86.4
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 6.2e-15 84.7 44 88.6
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 6.2e-15 84.7 44 88.6
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 8.1e-15 84.3 44 84.1
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 90.9
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 1.1e-14 84.0 44 81.8
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 90.9
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 88.6
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 86.4
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 90.9
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 88.6
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 88.6
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 88.6
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 88.6
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 90.9
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.4e-14 83.6 44 86.4
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 1.8e-14 83.2 44 88.6
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 2.3e-14 82.8 44 88.6
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 4.0e-14 82.0 44 86.4
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 4.0e-14 82.0 44 86.4
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 4.0e-14 82.0 44 86.4
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 4.0e-14 82.0 44 86.4
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 4.0e-14 82.0 44 84.1
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 4.0e-14 82.0 44 86.4
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 5.2e-14 81.6 44 86.4
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 5.2e-14 81.6 44 84.1
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 5.2e-14 81.6 44 86.4
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 5.2e-14 81.6 44 86.4
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 6.8e-14 81.3 44 84.1
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 8.9e-14 80.9 44 84.1
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 8.9e-14 80.9 44 84.1
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 1.2e-13 80.5 44 81.8
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 1.5e-13 80.1 44 86.4
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.5e-13 80.1 44 84.1
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 2.0e-13 79.7 44 84.1
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 2.6e-13 79.3 43 86.0
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 3.4e-13 79.0 44 77.3
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 5.8e-13 78.2 44 77.3
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 7.5e-13 77.8 44 77.3
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 9.9e-13 77.4 42 83.3
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 1.3e-12 77.0 44 72.7
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 1.3e-12 77.0 44 77.3
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 2.7e-10 69.3 44 61.4
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 3.5e-10 68.9 37 89.2
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 8.1e-07 57.8 31 80.6
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.8e-06 56.6 37 73.0
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 1.8e-06 56.6 44 54.5
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 3.1e-06 55.8 43 55.8


User provided reference genes

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