Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 8.8e-81 303.5 148 100.0
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 7.7e-69 263.8 146 84.9
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.7e-60 236.1 148 75.7
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 2.2e-60 235.7 148 77.0
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 3.8e-60 235.0 148 75.0
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 3.8e-60 235.0 148 76.4
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 5.0e-60 234.6 148 75.0
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 5.0e-60 234.6 148 75.0
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 6.5e-60 234.2 148 75.0
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 8.5e-60 233.8 148 75.7
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 1.1e-59 233.4 148 73.6
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 1.5e-59 233.0 148 76.4
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 1.9e-59 232.6 148 74.3
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 1.9e-59 232.6 148 75.0
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 2.5e-59 232.3 148 74.3
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 3.2e-59 231.9 148 74.3
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 3.2e-59 231.9 148 73.6
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 4.2e-59 231.5 148 74.3
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 5.5e-59 231.1 148 75.0
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 5.5e-59 231.1 148 73.6
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 5.5e-59 231.1 148 75.7
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 5.5e-59 231.1 148 73.0
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 7.2e-59 230.7 148 73.0
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 7.2e-59 230.7 148 74.3
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 7.2e-59 230.7 148 74.3
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 7.2e-59 230.7 148 74.3
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 7.2e-59 230.7 148 74.3
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 9.4e-59 230.3 148 74.3
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 9.4e-59 230.3 148 75.0
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 9.4e-59 230.3 148 73.6
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 1.2e-58 229.9 148 73.0
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.6e-58 229.6 148 73.6
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 2.1e-58 229.2 148 72.3
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 2.1e-58 229.2 148 73.6
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 2.1e-58 229.2 148 72.3
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 2.7e-58 228.8 148 73.6
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.7e-58 228.8 148 73.0
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.7e-58 228.8 148 70.3
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.6e-58 228.4 148 73.0
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 3.6e-58 228.4 148 72.3
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 4.7e-58 228.0 148 73.0
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 4.7e-58 228.0 148 71.6
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 6.1e-58 227.6 148 73.6
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 6.1e-58 227.6 148 72.3
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 6.1e-58 227.6 148 71.6
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 6.1e-58 227.6 148 71.6
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 8.0e-58 227.3 148 72.3
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 8.0e-58 227.3 148 73.0
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 8.0e-58 227.3 148 73.0
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 8.0e-58 227.3 148 73.6
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.0e-57 226.9 148 72.3
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 1.0e-57 226.9 148 71.6
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.0e-57 226.9 148 73.0
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 1.0e-57 226.9 148 72.3
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 1.4e-57 226.5 148 70.9
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 1.8e-57 226.1 148 72.3
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 1.8e-57 226.1 148 72.3
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 1.8e-57 226.1 146 73.3
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 1.8e-57 226.1 148 70.3
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 3.0e-57 225.3 146 72.6
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 3.0e-57 225.3 146 71.9
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 3.0e-57 225.3 148 73.0
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 3.0e-57 225.3 148 73.0
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.0e-57 225.3 148 72.3
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 3.0e-57 225.3 148 72.3
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 3.0e-57 225.3 148 72.3
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 4.0e-57 224.9 148 71.6
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 4.0e-57 224.9 148 72.3
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.0e-57 224.9 148 72.3
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.2e-56 223.4 148 71.6
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 1.2e-56 223.4 148 73.0
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.5e-56 223.0 148 70.3
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 73.0
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 2.0e-56 222.6 148 70.9
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.6e-56 222.2 148 71.6
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 2.6e-56 222.2 146 70.5
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 5.7e-56 221.1 146 71.9
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 5.7e-56 221.1 148 68.9
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 7.5e-56 220.7 148 72.3
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 7.5e-56 220.7 148 72.3
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 1.3e-55 219.9 148 69.6
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.7e-55 219.5 146 71.9
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 2.8e-55 218.8 148 70.3
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 3.7e-55 218.4 148 69.6
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 3.7e-55 218.4 148 69.6
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 3.7e-55 218.4 148 70.3
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 8.2e-55 217.2 158 66.5
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 8.2e-55 217.2 138 74.6
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 4.1e-54 214.9 148 68.9
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 5.3e-54 214.5 140 71.4
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 5.3e-54 214.5 146 69.2
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 7.0e-54 214.2 168 63.7
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.7e-52 209.5 150 68.0
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 6.5e-52 207.6 135 72.6
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.1e-51 206.8 150 66.7
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 4.2e-51 204.9 130 73.8
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 7.2e-51 204.1 131 71.8
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.7e-50 202.2 135 67.4
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.7e-50 202.2 198 53.0
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 6.8e-49 197.6 124 74.2
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 7.5e-48 194.1 124 73.4
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 7.5e-48 194.1 124 73.4
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 9.8e-48 193.7 124 71.8
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 9.8e-48 193.7 123 74.0
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.7e-47 193.0 124 72.6
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 1.7e-47 193.0 146 61.0
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 2.2e-47 192.6 121 75.2
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 2.8e-47 192.2 146 60.3
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 6.3e-47 191.0 124 72.6
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 3.1e-46 188.7 126 69.8
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 3.5e-45 185.3 144 61.8
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 5.0e-44 181.4 130 65.4
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.1e-43 180.3 130 66.9
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 1.5e-43 179.9 130 67.7
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 6.1e-42 174.5 146 53.4
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 3.0e-41 172.2 121 66.9
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 3.0e-41 172.2 148 57.4
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 5.7e-40 167.9 118 67.8
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 5.6e-35 151.4 144 50.0
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 1.0e-33 147.1 119 63.0
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.0e-33 145.6 148 52.0
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 3.0e-33 145.6 148 52.0
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 3.0e-33 145.6 148 52.7
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 7.5e-32 141.0 113 60.2
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 6.0e-29 131.3 176 44.9
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 5.0e-28 128.3 82 75.6
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.3e-27 125.6 119 52.1
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.2e-26 123.6 83 68.7
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.8e-25 119.8 89 65.2
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 5.2e-17 91.7 58 74.1
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 5.2e-17 91.7 60 71.7
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.9e-17 90.9 62 71.0
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 8.9e-17 90.9 85 54.1
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.4e-16 89.0 65 67.7
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 4.4e-16 88.6 153 32.0
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 2.9e-15 85.9 63 61.9
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 1.9e-14 83.2 142 31.0
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 5.4e-14 81.6 152 32.2
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 9.2e-14 80.9 127 40.2
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.0e-12 77.4 50 68.0
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 3.9e-12 75.5 46 73.9
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 8.4e-07 57.8 63 47.6


User provided reference genes

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