Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22891 Beta vulgaris HOM05D008627 ORTHO05D010841 5.8e-101 370.9 191 100.0
AUR62007022 Chenopodium quinoa HOM05D008627 ORTHO05D010841 2.1e-71 272.7 191 77.5
AUR62017639 Chenopodium quinoa HOM05D008627 ORTHO05D010841 5.8e-69 264.6 191 77.0
AUR62012873 Chenopodium quinoa HOM05D008627 ORTHO05D010841 3.9e-57 225.3 164 76.2
TWI74G0088 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 2.0e-53 213.0 137 76.6
FAN17G1667 Fragaria x ananassa HOM05D008627 ORTHO05D010841 4.5e-53 211.8 135 77.8
FAN07G2611 Fragaria x ananassa HOM05D008627 ORTHO05D010841 5.8e-53 211.5 135 77.8
HanXRQChr06g0175551 Helianthus annuus HOM05D008627 ORTHO05D010841 5.8e-53 211.5 136 75.7
FAN12G2769 Fragaria x ananassa HOM05D008627 ORTHO05D010841 1.3e-52 210.3 135 76.3
COL.COLO4_20905 Corchorus olitorius HOM05D008627 ORTHO05D010841 1.7e-52 209.9 185 62.2
FvH4_4g36570 Fragaria vesca HOM05D008627 ORTHO05D010841 1.7e-52 209.9 135 76.3
TWI77G0869 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 2.9e-52 209.1 147 72.8
Potri.010G096600 Populus trichocarpa HOM05D008627 ORTHO05D010841 1.4e-51 206.8 137 75.2
Potri.008G145500 Populus trichocarpa HOM05D008627 ORTHO05D010841 2.5e-51 206.1 134 76.9
RcHm_v2.0_Chr4g0446331 Rosa chinensis HOM05D008627 ORTHO05D010841 2.5e-51 206.1 135 74.8
Sabra10G0069200 Salix brachista HOM05D008627 ORTHO05D010841 2.5e-51 206.1 135 77.0
Ciclev10032846m.g Citrus clementina HOM05D008627 ORTHO05D010841 1.6e-50 203.4 131 74.8
ECA246G0765 Erigeron canadensis HOM05D008627 ORTHO05D010841 3.5e-50 202.2 134 76.1
Cpa.g.sc953.2 Carica papaya HOM05D008627 ORTHO05D010841 4.6e-50 201.8 164 61.6
Lsat_1_v5_gn_0_9181 Lactuca sativa HOM05D008627 ORTHO05D010841 4.6e-50 201.8 137 72.3
Duzib151G0774 Durio zibethinus HOM05D008627 ORTHO05D010841 3.9e-49 198.7 133 75.9
Gohir.D10G133100 Gossypium hirsutum HOM05D008627 ORTHO05D010841 1.3e-47 193.7 133 73.7
FAN22G1733 Fragaria x ananassa HOM05D008627 ORTHO05D010841 6.3e-47 191.4 168 61.3
Gohir.A10G133600 Gossypium hirsutum HOM05D008627 ORTHO05D010841 8.2e-47 191.0 133 72.9
Gorai.011G146800 Gossypium raimondii HOM05D008627 ORTHO05D010841 8.2e-47 191.0 134 73.9
Prupe.1G344200 Prunus persica HOM05D008627 ORTHO05D010841 1.4e-46 190.3 132 70.5
MD16G1006400 Malus domestica HOM05D008627 ORTHO05D010841 1.0e-44 184.1 131 71.8
MBI03_g05119_MAGBIO Magnolia biondii HOM05D008627 ORTHO05D010841 2.9e-44 182.6 128 71.1
ATR0618G186 Amborella trichopoda HOM05D008627 ORTHO05D010841 3.8e-44 182.2 130 69.2
CDE05G3193 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 2.7e-42 176.0 122 68.9
HPP92_002493 Vanilla planifolia HOM05D008627 ORTHO05D010841 2.2e-39 166.4 125 63.2
Thecc.04G186000 Theobroma cacao HOM05D008627 ORTHO05D010841 1.1e-38 164.1 118 70.3
PSO478G2256 Papaver somniferum HOM05D008627 ORTHO05D010841 2.7e-34 149.4 175 48.6
PSO017G6499 Papaver somniferum HOM05D008627 ORTHO05D010841 3.6e-34 149.1 172 48.3
CBR_g23395 Chara braunii HOM05D008627 ORTHO05D010841 1.5e-32 143.7 117 61.5
Pp3c5_20280 Physcomitrium patens HOM05D008627 ORTHO05D010841 6.5e-28 128.3 146 47.3
Dinv20704 Davidia involucrata HOM05D008627 ORTHO05D010841 4.4e-24 115.5 115 53.9
CDE05G0278 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 1.7e-23 113.6 75 72.0
Duzib151G0313 Durio zibethinus HOM05D008627 ORTHO05D010841 3.1e-22 109.4 80 68.8
Prupe.7G051000 Prunus persica HOM05D008627 ORTHO05D010841 2.9e-20 102.8 69 68.1
Prupe.1G083400 Prunus persica HOM05D008627 ORTHO05D010841 5.0e-20 102.1 68 69.1
Prupe.1G114900 Prunus persica HOM05D008627 ORTHO05D010841 5.0e-20 102.1 68 69.1
Prupe.3G229600 Prunus persica HOM05D008627 ORTHO05D010841 8.5e-20 101.3 79 60.8
Hund24318 Selenicereus undatus HOM05D008627 ORTHO05D010841 1.1e-19 100.9 191 43.5
Cre12.g559150 Chlamydomonas reinhardtii HOM05D008627 ORTHO05D010841 1.8e-17 93.6 150 38.0
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 6.5e-12 75.1 138 39.1
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 6.5e-12 75.1 138 39.1
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 8.5e-12 74.7 116 37.9
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 7.2e-11 71.6 173 32.4
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 9.4e-11 71.2 135 34.8
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 1.6e-10 70.5 143 31.5
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 1.6e-10 70.5 144 31.9
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 1.6e-10 70.5 125 36.8
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 2.1e-10 70.1 158 33.5
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 2.1e-10 70.1 156 30.8
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 2.7e-10 69.7 144 31.9
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 2.7e-10 69.7 144 31.9
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 3.6e-10 69.3 166 33.1
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 3.6e-10 69.3 125 37.6
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 3.6e-10 69.3 125 37.6
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 3.6e-10 69.3 116 36.2
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 4.7e-10 68.9 143 31.5
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 4.7e-10 68.9 143 30.8
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 4.7e-10 68.9 122 36.9
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 4.7e-10 68.9 158 32.9
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 4.7e-10 68.9 125 36.0
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 4.7e-10 68.9 122 36.9
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 4.7e-10 68.9 139 33.8
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 6.1e-10 68.6 143 31.5
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 6.1e-10 68.6 122 36.9
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 6.1e-10 68.6 156 31.4
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 6.1e-10 68.6 166 31.9
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 6.1e-10 68.6 122 36.1
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 8.0e-10 68.2 138 32.6
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 8.0e-10 68.2 121 33.1
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 1.0e-09 67.8 144 31.9
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 1.0e-09 67.8 144 31.9
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 1.0e-09 67.8 132 32.6
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.0e-09 67.8 114 36.8
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 1.0e-09 67.8 139 33.1
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.4e-09 67.4 134 32.1
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 1.4e-09 67.4 143 30.8
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.4e-09 67.4 158 32.9
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 1.4e-09 67.4 166 32.5
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 1.4e-09 67.4 154 31.8
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 1.8e-09 67.0 122 34.4
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.8e-09 67.0 120 36.7
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 1.8e-09 67.0 124 32.3
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 2.3e-09 66.6 122 36.1
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 2.3e-09 66.6 160 31.9
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 2.3e-09 66.6 125 34.4
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 2.3e-09 66.6 143 30.1
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 2.3e-09 66.6 121 34.7
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 3.0e-09 66.2 132 31.8
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 3.0e-09 66.2 132 31.8
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 3.0e-09 66.2 122 34.4
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 3.0e-09 66.2 164 29.3
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 3.0e-09 66.2 122 32.8
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 3.0e-09 66.2 143 31.5
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 4.0e-09 65.9 124 33.1
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 4.0e-09 65.9 156 32.1
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 4.0e-09 65.9 122 34.4
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 5.2e-09 65.5 125 32.8
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 5.2e-09 65.5 132 31.8
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 5.2e-09 65.5 132 31.8
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 5.2e-09 65.5 132 31.8
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 5.2e-09 65.5 122 33.6
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 5.2e-09 65.5 122 34.4
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 5.2e-09 65.5 122 34.4
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.2e-09 65.5 160 31.9
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 5.2e-09 65.5 160 31.9
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 5.2e-09 65.5 120 33.3
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 5.2e-09 65.5 130 35.4
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 5.2e-09 65.5 125 33.6
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 5.2e-09 65.5 125 33.6
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 5.2e-09 65.5 143 32.2
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 6.8e-09 65.1 117 32.5
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 6.8e-09 65.1 122 33.6
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 6.8e-09 65.1 120 35.8
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 6.8e-09 65.1 120 34.2
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 6.8e-09 65.1 122 34.4
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 6.8e-09 65.1 120 32.5
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 6.8e-09 65.1 127 33.9
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 6.8e-09 65.1 145 29.0
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 8.8e-09 64.7 116 33.6
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 8.8e-09 64.7 122 32.8
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 8.8e-09 64.7 121 33.1
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 8.8e-09 64.7 118 34.7
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.2e-08 64.3 122 32.8
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 1.2e-08 64.3 122 32.8
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 1.2e-08 64.3 122 32.8
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 1.2e-08 64.3 122 32.8
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.2e-08 64.3 143 31.5
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 1.2e-08 64.3 120 32.5
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.5e-08 63.9 142 30.3
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 1.5e-08 63.9 166 32.5
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 1.5e-08 63.9 122 32.8
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 1.5e-08 63.9 116 33.6
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 1.5e-08 63.9 144 30.6
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 2.0e-08 63.5 114 34.2
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 2.0e-08 63.5 116 31.9
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 2.0e-08 63.5 133 30.8
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 2.0e-08 63.5 130 33.8
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 2.0e-08 63.5 121 35.5
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 2.6e-08 63.2 122 32.0
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 2.6e-08 63.2 164 28.7
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 2.6e-08 63.2 125 32.8
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 2.6e-08 63.2 122 32.8
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 2.6e-08 63.2 122 32.0
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 2.6e-08 63.2 114 32.5
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 3.4e-08 62.8 113 33.6
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 3.4e-08 62.8 135 31.9
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 3.4e-08 62.8 137 30.7
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 3.4e-08 62.8 120 32.5
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 3.4e-08 62.8 116 34.5
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 3.4e-08 62.8 137 31.4
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 4.4e-08 62.4 120 32.5
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 4.4e-08 62.4 124 33.1
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 4.4e-08 62.4 122 30.3
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 4.4e-08 62.4 117 33.3
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 5.7e-08 62.0 135 31.1
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 7.5e-08 61.6 113 31.9
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 7.5e-08 61.6 158 30.4
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 7.5e-08 61.6 119 33.6
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 9.8e-08 61.2 122 32.0
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 9.8e-08 61.2 122 33.6
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.3e-07 60.8 118 33.1
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.3e-07 60.8 142 30.3
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 1.3e-07 60.8 122 31.1
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 1.3e-07 60.8 84 36.9
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 1.3e-07 60.8 121 33.9
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 2.2e-07 60.1 121 33.9
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 2.2e-07 60.1 121 33.1
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 1.4e-06 57.4 113 32.7
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 7.0e-06 55.1 126 30.2
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 9.1e-06 54.7 92 34.8


User provided reference genes

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