Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.8e-281 971.8 477 100.0
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.9e-234 815.1 474 82.7
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 4.3e-230 801.2 427 90.4
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 3.2e-217 758.4 469 78.5
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.1e-214 750.0 468 77.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.3e-213 746.5 469 76.5
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 3.4e-211 738.4 470 77.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.2e-210 735.7 468 76.7
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 2.9e-210 735.3 467 76.9
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.4e-209 733.0 469 76.3
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.5e-209 732.3 471 75.2
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.2e-209 731.9 474 74.9
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 3.2e-209 731.9 465 76.8
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 4.2e-209 731.5 475 75.4
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 4.2e-209 731.5 469 73.8
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 9.3e-209 730.3 475 75.2
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.2e-208 729.9 469 75.7
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-208 729.6 471 75.4
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.1e-208 729.2 469 75.1
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 6.1e-208 727.6 468 75.6
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 6.1e-208 727.6 467 75.6
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 6.1e-208 727.6 476 74.4
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 7.9e-208 727.2 469 75.3
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.1e-207 724.5 469 75.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.1e-207 724.5 469 73.8
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 8.7e-207 723.8 468 74.1
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.1e-206 723.4 466 73.8
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.1e-206 723.4 467 74.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.5e-206 722.2 469 74.0
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 4.3e-206 721.5 467 74.5
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 7.4e-206 720.7 471 74.1
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.2e-205 719.2 476 73.7
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 3.7e-205 718.4 470 73.4
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.3e-205 717.6 469 73.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-204 716.8 469 73.1
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.1e-204 716.8 476 72.5
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 3.4e-203 711.8 468 73.1
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 5.9e-203 711.1 481 73.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 7.7e-203 710.7 468 73.5
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.0e-202 710.3 468 73.1
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.0e-202 710.3 467 73.7
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.2e-201 705.3 470 74.3
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 9.4e-201 703.7 461 74.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.6e-200 703.0 449 76.4
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 4.6e-200 701.4 469 72.9
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 4.6e-200 701.4 474 72.2
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 6.1e-200 701.0 474 71.7
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.4e-199 699.9 467 71.7
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.4e-199 699.9 469 72.5
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 3.9e-199 698.4 468 72.2
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.7e-199 697.6 469 71.4
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.5e-198 695.7 467 72.6
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.3e-198 695.3 466 72.5
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 6.3e-197 691.0 466 71.0
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 5.9e-195 684.5 464 72.4
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.7e-194 682.9 468 71.4
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.2e-194 682.6 468 71.2
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 3.8e-194 681.8 451 73.4
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.0e-194 681.4 451 72.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.0e-194 681.4 440 74.1
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 6.5e-194 681.0 466 71.5
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.4e-193 679.9 468 70.9
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.9e-193 679.5 426 76.5
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.0e-191 673.7 469 70.6
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 6.7e-191 671.0 466 71.5
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.4e-190 668.3 473 68.3
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 8.2e-189 664.1 466 68.7
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 8.2e-189 664.1 476 70.0
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.4e-188 662.5 546 61.5
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.6e-187 659.8 466 68.9
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 2.6e-187 659.1 467 68.3
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 5.9e-187 657.9 474 69.8
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 6.5e-186 654.4 429 74.1
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.2e-185 652.1 469 69.5
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 7.2e-185 651.0 474 69.2
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-184 650.2 466 69.7
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.6e-184 649.8 474 69.6
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.6e-184 649.8 468 68.6
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.1e-184 649.4 473 68.9
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.3e-183 646.0 494 65.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 2.3e-183 646.0 469 68.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 5.2e-183 644.8 470 69.8
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.1e-182 643.7 474 69.0
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.0e-182 642.9 470 69.1
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.6e-182 642.5 409 75.3
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.7e-182 641.3 467 69.8
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.8e-181 638.3 513 62.0
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 3.1e-180 635.6 469 68.2
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 4.1e-180 635.2 471 68.4
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.0e-180 634.4 469 68.7
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 9.1e-180 634.0 469 68.0
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.2e-179 633.6 469 68.2
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 4.5e-179 631.7 468 68.2
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 4.5e-179 631.7 468 68.2
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 7.7e-179 630.9 473 67.7
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.3e-178 630.2 473 67.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.2e-178 629.4 471 67.9
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 3.4e-174 615.5 465 66.2
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.4e-174 615.1 469 65.2
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 4.4e-174 615.1 471 65.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.3e-173 611.3 523 61.6
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.4e-172 610.1 477 66.0
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.4e-172 610.1 469 65.7
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 3.2e-169 599.0 411 70.1
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 5.5e-169 598.2 440 68.2
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.7e-162 576.6 363 74.1
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.3e-161 572.4 471 63.7
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 4.3e-161 572.0 475 60.4
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 7.5e-158 561.2 470 63.4
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.0e-156 554.7 350 75.7
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.2e-155 553.9 408 67.2
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.1e-153 547.4 506 56.1
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 4.1e-148 528.9 488 57.6
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.0e-147 526.6 361 70.4
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.7e-146 523.5 469 59.7
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 5.0e-146 521.9 469 59.3
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.6e-137 491.9 469 55.9
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.8e-136 489.6 477 53.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 3.1e-127 459.5 546 46.0
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.7e-115 419.9 469 49.5
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 4.0e-111 406.0 270 71.5
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-108 397.9 306 65.0
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.2e-108 396.4 330 65.2
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.8e-103 380.6 239 77.4
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 7.6e-94 348.6 477 44.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.0e-86 323.9 283 63.3
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 9.4e-84 315.1 383 46.2
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.0e-82 310.1 260 62.3
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.0e-78 297.4 275 58.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 6.5e-77 292.4 485 36.3
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.2e-69 267.3 509 37.3
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.7e-67 260.4 272 48.9
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 6.1e-67 259.2 460 38.0
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.8e-66 255.4 248 56.9
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 7.7e-62 242.3 458 35.8
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.0e-53 215.3 297 44.1
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.5e-52 210.7 174 63.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.2e-49 201.8 209 52.2
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.4e-49 200.3 111 81.1
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.7e-48 196.8 111 79.3
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.4e-47 194.9 111 78.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.1e-47 193.7 181 56.4
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 5.9e-46 189.5 198 51.0
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.8e-43 180.6 197 51.8
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.2e-39 165.6 111 69.4
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.0e-37 162.2 103 75.7
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.7e-37 161.4 315 34.9
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.1e-36 158.7 125 62.4
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.1e-35 154.5 107 72.0
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 7.5e-33 146.0 104 66.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.2e-31 140.6 92 68.5
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.5e-30 137.1 122 58.2
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.3e-28 130.6 67 92.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.1e-23 115.5 125 54.4
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 4.6e-22 110.2 64 81.2
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 5.8e-17 93.2 58 75.9
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 4.6e-14 83.6 92 54.3
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.0e-09 68.2 41 80.5
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 5.4e-07 60.1 39 74.4
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.2e-06 58.9 39 71.8


User provided reference genes

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