Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 3.1e-107 392.5 319 100.0
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 4.5e-98 362.1 320 83.4
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 8.4e-97 357.8 320 83.1
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.2e-96 355.9 320 82.5
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.1e-87 326.6 317 78.5
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.5e-85 320.5 317 84.9
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 3.3e-85 319.3 317 77.3
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 3.7e-84 315.8 319 85.9
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 3.7e-84 315.8 317 76.3
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 3.7e-84 315.8 318 75.8
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.4e-83 313.9 317 85.8
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.8e-83 313.5 319 77.4
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 2.4e-83 313.2 319 76.8
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.5e-82 310.5 317 86.4
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.5e-82 310.5 317 74.4
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 3.4e-82 309.3 317 80.8
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 7.7e-82 308.1 317 78.5
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 1.7e-81 307.0 323 75.5
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 2.9e-81 306.2 317 75.4
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 5.0e-81 305.4 317 75.7
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.4e-80 303.9 325 74.5
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 1.4e-80 303.9 323 74.6
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 4.6e-79 298.9 319 79.0
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.1e-79 298.5 319 74.0
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.1e-79 298.5 317 74.4
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 6.1e-79 298.5 317 82.6
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 7.9e-79 298.1 319 73.0
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.0e-78 297.7 317 82.0
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 3.0e-78 296.2 317 83.0
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 3.9e-78 295.8 319 77.4
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.9e-78 295.8 309 77.0
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 3.9e-78 295.8 319 73.4
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 3.9e-78 295.8 319 73.4
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 6.7e-78 295.0 319 82.1
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 6.7e-78 295.0 317 73.5
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.1e-77 294.3 319 81.8
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.5e-77 293.9 317 77.6
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 5.7e-77 292.0 319 74.9
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 5.7e-77 292.0 316 82.3
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 7.4e-77 291.6 319 72.7
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 9.7e-77 291.2 306 86.6
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 3.7e-76 289.3 307 75.6
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 6.3e-76 288.5 319 77.4
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.8e-75 287.0 319 82.1
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 5.3e-75 285.4 317 82.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.9e-70 269.2 309 70.9
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.1e-70 268.9 309 70.9
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.7e-68 263.8 307 80.8
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 2.6e-66 256.5 143 83.9
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.7e-65 253.8 147 81.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.7e-65 253.8 143 83.2
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 8.5e-65 251.5 146 81.5
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 8.5e-65 251.5 146 80.8
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 8.5e-65 251.5 146 81.5
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 1.5e-64 250.8 143 82.5
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 1.9e-64 250.4 147 81.0
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 3.2e-64 249.6 143 81.1
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 7.2e-64 248.4 143 79.7
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.2e-63 247.7 143 79.0
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.6e-63 247.3 143 80.4
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.6e-63 247.3 143 80.4
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.6e-63 247.3 143 79.7
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 2.7e-63 246.5 143 79.0
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 2.7e-63 246.5 144 78.5
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.6e-63 246.1 145 77.9
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.6e-63 246.1 145 77.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 3.6e-63 246.1 144 77.8
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 4.7e-63 245.7 143 77.6
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 4.7e-63 245.7 146 78.1
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.8e-62 243.8 143 79.7
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 79.7
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 3.0e-62 243.0 143 77.6
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 8.8e-62 241.5 143 76.2
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 8.8e-62 241.5 145 76.6
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 2.0e-61 240.4 144 79.2
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.2
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 76.2
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 76.2
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 75.5
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 75.5
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 78.3
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 78.3
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 76.2
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 77.6
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 9.7e-61 238.0 145 75.2
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 9.7e-61 238.0 145 75.9
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 4.8e-60 235.7 144 75.7
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 8.2e-60 235.0 146 77.4
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 8.2e-60 235.0 318 74.2
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 72.7
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 72.7
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 72.7
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 7.0e-59 231.9 144 75.7
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 9.1e-59 231.5 143 72.7
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.2e-58 231.1 143 72.0
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.2e-58 231.1 143 72.0
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.2e-58 231.1 143 72.0
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.6e-58 230.7 143 72.0
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.0e-58 230.3 143 72.7
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 2.0e-58 230.3 144 74.3
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 2.7e-58 229.9 143 72.7
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 3.5e-58 229.6 143 71.3
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 3.5e-58 229.6 143 71.3
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 4.5e-58 229.2 143 72.0
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 7.7e-58 228.4 143 71.3
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.0e-57 228.0 319 68.3
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 2.9e-57 226.5 143 70.6
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.6e-55 220.7 274 71.9
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.1e-55 220.3 320 69.4
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.5e-53 214.2 318 60.4
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 6.1e-47 192.2 309 68.3
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 4.4e-45 186.0 115 73.0
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 4.4e-45 186.0 144 59.0
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.2e-44 183.7 318 66.4
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 6.3e-44 182.2 318 59.7
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.4e-43 181.0 306 69.0
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.7e-41 174.1 308 67.2
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.5e-40 171.0 143 56.6
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-40 169.9 106 75.5
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 2.8e-39 166.8 332 47.9
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 4.3e-32 142.9 206 71.4
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 4.7e-31 139.4 305 40.3
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 6.8e-30 135.6 326 57.4
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 6.4e-28 129.0 114 57.9
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 2.2e-20 104.0 95 55.8
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.5e-16 90.5 146 36.3
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.1e-15 87.4 146 37.0
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.4e-11 74.7 111 42.3
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.2e-11 73.6 51 66.7
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 4.6e-10 69.7 120 37.5
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 7.8e-10 68.9 38 76.3
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 3.3e-08 63.5 38 71.1
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 7.3e-08 62.4 138 31.9
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 9.6e-08 62.0 32 81.2
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 1.6e-07 61.2 31 87.1
BcaC04g19901 Brassica carinata HOM05D000347 ORTHO05D001997 6.8e-06 55.8 128 28.9
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 8.9e-06 55.5 128 28.9
BolC9t57860H Brassica oleracea HOM05D000347 ORTHO05D001997 8.9e-06 55.5 128 28.9
Os03g0640100 Oryza sativa ssp. japonica HOM05D000347 ORTHO05D001997 8.9e-06 55.5 140 29.3


User provided reference genes

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