Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1579.3 840 100.0
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1265.4 832 81.1
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1187.2 824 75.6
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1164.1 810 76.7
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 0.0e+00 1160.6 651 91.6
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1160.2 839 74.1
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1151.3 834 73.1
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 0.0e+00 1150.2 651 90.6
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 824 73.9
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 846 71.9
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1131.3 833 72.4
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 805 73.9
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1118.2 831 70.8
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1117.1 823 72.2
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1117.1 836 71.9
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1117.1 833 71.9
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1115.9 842 70.7
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 835 71.6
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 827 71.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1113.6 832 70.7
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 792 73.7
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 842 70.5
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 839 70.4
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 827 71.6
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 827 71.6
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 842 70.4
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1111.3 794 73.3
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 827 71.5
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1110.1 795 73.2
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1109.4 833 72.1
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 827 71.2
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1105.9 772 74.7
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 837 71.3
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 793 74.0
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 832 71.2
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1102.4 800 72.9
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1102.0 827 71.0
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 763 75.5
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 764 75.3
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 830 70.1
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1095.9 792 73.2
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1094.7 800 72.4
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 805 72.3
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 792 73.2
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 829 70.6
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1093.2 845 70.1
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1092.4 793 72.8
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1091.3 836 69.7
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1088.9 814 71.7
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 800 71.6
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 835 69.8
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 835 69.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1080.5 830 71.1
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1078.2 834 70.0
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 796 71.4
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 5.7e-312 1074.7 799 71.0
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 5.7e-312 1074.3 837 68.9
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 5.7e-312 1073.9 799 71.0
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 8.6e-311 1070.1 799 70.8
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 834 69.3
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 834 69.5
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 1.2e-307 1059.7 836 68.9
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 1.2e-307 1059.7 770 72.9
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 3.4e-307 1058.1 844 67.3
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 1.1e-305 1053.1 800 68.5
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 3.2e-305 1051.6 937 63.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 3.2e-305 1051.6 824 68.8
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 5.5e-305 1050.8 828 68.6
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 834 67.1
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 771 72.4
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 839 67.9
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 810 67.7
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 1.0e-303 1046.6 798 70.6
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 2.6e-299 1031.9 841 67.5
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 3.2e-297 1025.0 769 70.9
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 4.2e-297 1024.6 879 65.3
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 2.7e-296 1021.9 867 63.7
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 6.7e-295 1017.3 834 65.5
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 5.7e-294 1014.2 823 67.0
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 2.2e-293 1012.3 795 67.2
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 1.8e-292 1009.2 828 65.6
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 5.3e-292 1007.7 828 65.2
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 9.1e-292 1006.9 825 65.7
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 3.5e-291 1005.0 825 65.6
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 5.0e-290 1001.1 835 64.7
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 6.5e-290 1000.7 792 67.0
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 1.6e-288 996.1 798 66.2
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 4.7e-288 994.6 797 66.2
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 1.0e-287 993.4 797 66.1
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 1.8e-287 992.6 831 65.7
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 1.8e-287 992.6 818 63.8
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 4.8e-285 984.6 833 64.0
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 8.3e-285 983.8 830 64.0
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 1.7e-282 976.1 842 62.8
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 3.8e-282 974.9 795 65.2
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 6.5e-282 974.2 764 66.8
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 6.5e-282 974.2 826 63.4
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 2.2e-277 959.1 928 60.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 8.3e-277 957.2 739 67.3
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.8e-276 956.1 768 67.8
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.3e-274 949.1 676 71.2
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 9.8e-270 933.7 641 76.1
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.0e-266 923.7 822 62.4
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 2.8e-264 915.6 675 69.8
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.8e-263 912.9 821 61.0
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 2.6e-262 909.1 803 59.2
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 3.4e-262 908.7 572 80.1
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 1.2e-256 890.2 622 73.3
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.6e-246 855.9 825 54.4
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 5.8e-246 854.7 797 55.2
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 4.1e-244 848.6 795 55.5
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 6.6e-226 788.1 805 51.7
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.5e-222 776.9 859 56.0
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 2.0e-222 776.5 792 57.4
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.7e-197 693.7 429 81.1
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.5e-161 572.0 442 69.5
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 2.4e-159 567.0 482 64.3
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 3.8e-128 463.4 791 38.1
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 2.1e-126 457.6 318 74.8
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.4e-121 439.9 314 70.1
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.4e-119 433.0 287 76.7
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 3.5e-118 430.3 791 33.8
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 6.9e-114 416.0 384 62.2
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 3.7e-99 367.1 856 31.0
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 3.4e-89 334.0 367 55.6
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.9e-86 322.8 298 63.8
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.7e-68 262.7 310 53.2
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 5.2e-53 213.8 144 77.8
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.9e-48 198.0 259 49.4
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 3.4e-44 184.5 127 74.8
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-42 179.5 142 71.1
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 2.0e-41 175.3 133 69.2
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.4e-36 157.5 151 57.0
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.7e-36 157.1 151 57.0
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.0e-33 148.7 160 54.4
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.3e-32 146.0 121 68.6
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 5.2e-13 80.9 70 67.1
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.2e-09 69.7 251 30.3


User provided reference genes

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