Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.5e-276 955.7 513 100.0
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 9.1e-202 707.2 506 76.7
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.5e-199 699.9 504 78.2
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.5e-191 673.3 506 72.5
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.0e-189 667.2 514 72.8
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 2.6e-188 662.5 513 70.8
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.3e-187 660.2 502 72.1
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.3e-187 660.2 502 72.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 8.3e-187 657.5 492 74.4
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 4.1e-186 655.2 512 70.1
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.7e-184 649.8 512 70.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 8.6e-184 647.5 512 70.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.5e-183 646.0 511 69.9
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 3.3e-183 645.6 508 69.7
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.6e-183 644.8 516 69.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 7.2e-183 644.4 512 69.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 9.5e-183 644.0 511 70.6
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.2e-182 643.7 514 69.8
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 6.1e-182 641.3 509 69.2
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.3e-181 639.4 515 69.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 5.2e-181 638.3 508 69.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 6.8e-181 637.9 508 69.1
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.5e-180 636.7 513 69.0
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 4.4e-180 635.2 516 69.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.7e-180 634.8 511 69.1
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.3e-179 633.6 511 69.1
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.7e-179 633.3 512 68.8
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.7e-179 632.1 506 69.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.4e-179 631.3 531 66.9
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.4e-178 630.2 513 68.2
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.2e-178 629.0 509 68.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 4.1e-178 628.6 496 69.2
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.6e-177 626.7 541 65.4
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 4.6e-177 625.2 514 68.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 7.8e-177 624.4 509 68.4
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.0e-176 624.0 503 69.8
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-176 623.6 511 68.5
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.3e-176 623.6 513 68.0
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.3e-176 622.9 513 68.0
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.0e-176 621.7 517 67.3
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 6.6e-176 621.3 509 67.6
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 6.6e-176 621.3 512 68.0
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.5e-175 619.4 515 67.4
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.3e-175 618.6 512 67.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.3e-175 617.8 511 67.9
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 7.3e-175 617.8 508 67.3
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 7.3e-175 617.8 512 67.0
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.2e-174 617.1 509 67.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.2e-174 617.1 511 68.1
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.2e-174 617.1 505 67.7
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 4.7e-174 615.1 513 68.0
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 6.2e-174 614.8 481 70.5
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 3.1e-173 612.5 513 66.9
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 6.8e-173 611.3 514 66.5
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.2e-172 610.5 505 67.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 4.4e-172 608.6 515 66.4
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.7e-171 606.7 505 66.5
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.7e-171 606.7 523 67.5
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.7e-171 606.7 506 66.8
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.2e-171 606.3 511 65.9
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.7e-171 605.5 515 66.0
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.7e-171 605.5 512 66.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 8.3e-171 604.4 514 65.6
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.4e-170 603.6 524 65.6
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.4e-170 603.6 511 66.1
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 3.2e-170 602.4 513 67.8
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 6.0e-169 598.2 517 64.6
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 7.8e-169 597.8 520 65.6
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.3e-168 597.0 509 66.4
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.0e-168 595.9 519 65.9
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 5.0e-168 595.1 536 64.0
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 8.6e-168 594.3 519 64.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.1e-167 594.0 498 66.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.1e-167 594.0 518 64.9
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.9e-167 593.2 519 65.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.9e-167 593.2 519 64.7
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.9e-167 593.2 512 65.0
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 7.3e-167 591.3 518 64.5
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 7.3e-167 591.3 518 65.1
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 4.7e-166 588.6 502 67.1
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.8e-165 586.6 520 65.4
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.3e-165 586.3 508 65.0
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 5.2e-165 585.1 505 65.3
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 8.9e-165 584.3 519 64.0
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-164 583.9 512 63.3
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.5e-164 583.6 500 65.6
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 9.8e-164 580.9 513 63.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.9e-162 576.6 509 63.3
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 5.4e-162 575.1 522 63.4
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 5.4e-162 575.1 516 63.8
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 7.1e-162 574.7 511 65.0
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 9.2e-162 574.3 516 63.6
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-161 573.9 485 66.8
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.2e-161 573.9 499 65.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.3e-160 569.7 518 63.1
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 3.0e-160 569.3 505 64.0
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 5.1e-160 568.5 514 61.3
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.1e-159 567.4 452 69.2
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.9e-159 566.6 515 62.5
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.6e-158 562.4 433 72.1
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.6e-158 562.4 516 62.8
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.8e-157 560.1 504 61.7
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.1e-154 548.9 512 63.3
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.0e-149 532.3 393 74.3
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.4e-148 528.9 452 66.2
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.4e-141 507.3 543 56.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.3e-136 490.7 495 56.8
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.8e-131 472.6 369 70.7
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.1e-127 461.1 501 57.3
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.1e-125 454.5 516 53.5
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.5e-122 442.2 394 67.0
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 8.7e-120 434.9 517 52.6
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.6e-118 430.6 419 58.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.4e-117 426.8 467 56.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 7.2e-114 415.2 371 66.3
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 8.2e-110 401.7 394 56.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.4e-100 369.8 512 49.8
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 4.2e-90 336.3 404 53.7
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 4.2e-90 336.3 404 53.7
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.3e-86 324.7 219 74.9
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 4.1e-85 319.7 438 47.9
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.6e-84 317.8 202 89.1
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.8e-83 313.2 390 47.7
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.5e-82 310.5 337 52.8
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.0e-80 305.1 460 44.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 4.0e-80 303.1 250 71.6
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-72 278.5 232 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 9.8e-71 271.9 443 41.5
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.6e-67 259.2 233 65.7
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 9.8e-55 218.8 439 37.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.1e-50 205.3 395 37.0
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.9e-50 204.5 286 47.9
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.4e-45 186.4 381 35.2
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.9e-40 169.1 205 53.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-39 167.9 101 83.2
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 4.4e-39 166.8 133 66.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-36 158.7 96 79.2
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.1e-36 157.9 106 67.9
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-34 151.8 289 39.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.9e-34 151.4 91 80.2
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.2e-30 137.9 87 77.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.9e-26 124.8 145 52.4
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.4e-21 108.6 185 41.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.8e-16 91.7 135 45.2
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.3e-13 79.3 61 63.9
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.3e-13 79.3 61 63.9
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.7e-11 72.8 61 59.0
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.5e-10 72.0 63 63.5
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.1e-08 65.9 66 51.5
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.8e-08 65.1 70 58.6
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.0e-06 59.3 50 70.0


User provided reference genes

Program Settings