Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 1.0e-125 453.4 227 100.0
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.3e-64 249.6 214 61.7
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 1.1e-61 240.7 226 55.8
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 1.4e-56 223.8 180 59.4
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.4e-56 223.8 212 55.7
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.8e-56 223.4 224 54.0
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 3.0e-56 222.6 227 52.0
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 5.1e-56 221.9 224 55.4
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 6.7e-56 221.5 224 53.1
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.5e-55 220.3 209 56.5
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 2.5e-55 219.5 209 56.5
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 7.4e-55 218.0 212 55.2
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.7e-54 216.9 212 54.7
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 2.8e-54 216.1 186 60.2
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 4.1e-53 212.2 181 54.1
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 3.4e-52 209.1 174 58.6
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 4.5e-52 208.8 227 52.4
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 5.9e-52 208.4 208 50.0
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 1.3e-51 207.2 220 51.4
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 2.2e-51 206.5 205 55.1
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 2.9e-51 206.1 174 59.2
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 3.8e-51 205.7 226 49.6
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 5.0e-51 205.3 219 50.2
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.1e-50 204.1 190 53.7
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.5e-50 203.0 191 54.5
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 4.2e-50 202.2 227 50.2
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 5.5e-50 201.8 143 74.8
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 7.2e-50 201.4 200 53.0
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 9.4e-50 201.1 209 51.7
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 9.4e-50 201.1 215 51.2
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 1.2e-49 200.7 227 51.5
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 2.7e-49 199.5 202 53.5
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 2.7e-49 199.5 222 53.2
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 2.7e-49 199.5 219 49.8
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 3.6e-49 199.1 174 59.2
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 6.1e-49 198.4 192 52.6
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.0e-48 197.6 171 57.3
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 1.8e-48 196.8 209 52.6
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 2.3e-48 196.4 174 59.2
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 2.3e-48 196.4 211 49.3
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 2.3e-48 196.4 214 53.3
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 3.9e-48 195.7 197 52.8
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 5.1e-48 195.3 209 50.7
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 5.1e-48 195.3 171 56.1
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 8.8e-48 194.5 174 58.0
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 8.8e-48 194.5 176 55.1
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.1e-47 194.1 167 58.1
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 1.5e-47 193.7 171 56.1
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 2.6e-47 193.0 206 51.5
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 3.3e-47 192.6 221 49.3
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.3e-47 192.6 192 52.6
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 4.4e-47 192.2 176 54.5
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 5.7e-47 191.8 191 52.9
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 9.7e-47 191.0 202 49.5
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 9.7e-47 191.0 202 49.5
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 9.7e-47 191.0 169 56.8
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.7e-46 190.3 209 49.3
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.7e-46 190.3 218 48.2
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 2.8e-46 189.5 213 51.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 6.3e-46 188.3 201 52.7
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 6.3e-46 188.3 207 51.2
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 8.2e-46 188.0 174 56.9
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.1e-45 187.6 173 54.3
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.4e-45 187.2 184 53.8
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 2.4e-45 186.4 172 52.9
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 4.1e-45 185.7 197 51.8
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 5.3e-45 185.3 173 56.6
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 5.3e-45 185.3 174 53.4
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 9.1e-45 184.5 173 55.5
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.2e-44 184.1 196 52.0
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 2.0e-44 183.3 207 50.2
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 2.0e-44 183.3 218 45.4
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 2.6e-44 183.0 173 57.8
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 3.5e-44 182.6 196 51.5
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.5e-44 182.6 214 47.7
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 4.5e-44 182.2 174 55.7
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 4.5e-44 182.2 218 45.9
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 5.9e-44 181.8 174 55.7
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 7.7e-44 181.4 174 55.2
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 7.7e-44 181.4 235 46.8
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 7.7e-44 181.4 174 55.2
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 7.7e-44 181.4 174 55.2
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 7.7e-44 181.4 186 52.7
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.9e-43 179.5 186 52.2
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 8.5e-43 177.9 168 57.1
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 3.6e-41 172.6 190 48.9
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 6.1e-41 171.8 207 48.3
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-40 169.1 202 43.1
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 1.1e-39 167.5 173 54.3
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 1.3e-38 164.1 184 47.8
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 1.4e-37 160.6 186 45.7
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.3e-35 154.1 141 55.3
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 1.3e-35 154.1 149 49.7
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 1.2e-33 147.5 182 46.7
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 7.5e-31 138.3 148 50.7
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.7e-30 137.1 142 50.0
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.7e-30 137.1 140 51.4
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 2.4e-29 133.3 125 52.8
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.4e-29 133.3 214 39.7
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 3.1e-29 132.9 142 49.3
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 9.4e-26 121.3 112 52.7
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 1.2e-25 120.9 121 49.6
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 4.7e-25 119.0 92 58.7
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 6.1e-25 118.6 116 52.6
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 3.4e-23 112.8 120 50.0
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 7.5e-23 111.7 121 50.4
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 7.5e-23 111.7 153 39.9
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 4.9e-22 109.0 111 51.4
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.1e-21 107.8 106 52.8
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.1e-21 107.8 123 52.8
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.6e-20 104.0 106 50.9
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 5.9e-20 102.1 101 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 1.9e-18 97.1 126 41.3
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-17 94.0 100 51.0
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 3.6e-17 92.8 101 49.5
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.0e-16 91.3 132 40.9
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.3e-16 90.1 62 67.7
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 2.6e-15 86.7 186 33.9
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 2.6e-15 86.7 186 33.9
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 2.2e-14 83.6 130 36.2
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 8.3e-14 81.6 55 69.1
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 4.6e-12 75.9 42 71.4
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-10 70.9 113 38.9
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 1.5e-10 70.9 57 61.4
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 9.5e-10 68.2 58 56.9
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-09 67.8 58 56.9
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 2.1e-09 67.0 130 35.4
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 2.1e-09 67.0 159 32.1
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 2.1e-09 67.0 159 32.1
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 6.8e-08 62.0 58 53.4


User provided reference genes

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