Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 2.7e-233 811.6 400 100.0
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.2e-187 659.1 402 81.3
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 7.4e-175 617.5 400 75.0
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 5.9e-124 448.4 271 82.7
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 1.0e-120 437.6 397 56.7
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 3.5e-116 422.5 399 54.9
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 4.6e-116 422.2 398 55.5
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 7.8e-116 421.4 399 55.1
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 1.7e-115 420.2 401 54.1
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.0e-115 419.5 401 55.6
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 3.0e-115 419.5 403 56.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.3e-114 416.0 401 53.4
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.6e-113 413.7 403 53.6
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 8.1e-113 411.4 399 52.4
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.8e-112 410.2 398 52.3
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 5.2e-112 408.7 393 54.5
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.2e-112 408.7 405 52.6
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 8.9e-112 407.9 399 53.1
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 1.7e-110 403.7 400 52.0
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 4.9e-110 402.1 397 51.6
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 6.4e-110 401.7 398 53.8
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.4e-109 400.6 400 51.0
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.4e-109 400.6 399 51.9
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 1.4e-109 400.6 405 53.3
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 5.4e-109 398.7 400 51.0
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 7.1e-109 398.3 399 51.4
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 1.6e-108 397.1 392 54.1
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.7e-108 396.4 400 50.8
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 3.5e-108 396.0 396 52.5
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 4.6e-108 395.6 401 51.4
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 1.0e-107 394.4 405 51.4
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 1.0e-107 394.4 402 53.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 2.3e-107 393.3 405 51.1
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 3.9e-107 392.5 402 51.7
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 8.6e-107 391.3 405 53.1
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.1e-106 391.0 400 51.0
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.1e-106 391.0 391 53.2
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.5e-106 390.6 400 50.0
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 7.3e-106 388.3 405 50.9
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 9.5e-106 387.9 400 50.8
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 1.6e-105 387.1 406 51.2
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 6.2e-105 385.2 399 51.9
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 6.2e-105 385.2 405 50.6
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 6.2e-105 385.2 395 51.6
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.4e-104 384.0 397 51.4
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.3e-104 383.3 399 49.6
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 4.0e-104 382.5 406 51.0
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 4.0e-104 382.5 406 51.0
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 6.8e-104 381.7 406 51.0
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 6.8e-104 381.7 398 49.5
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 8.9e-104 381.3 406 51.0
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 1.5e-103 380.6 404 49.3
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 2.6e-103 379.8 406 50.5
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 2.6e-103 379.8 404 50.7
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 3.4e-103 379.4 408 49.5
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 7.6e-103 378.3 398 48.7
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.3e-102 377.5 398 49.7
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 1.7e-102 377.1 399 50.4
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 2.2e-102 376.7 404 50.5
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 2.9e-102 376.3 400 50.5
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 2.9e-102 376.3 398 50.3
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 3.7e-102 375.9 395 48.9
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.4e-102 375.2 398 48.2
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 6.4e-102 375.2 398 48.2
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 8.4e-102 374.8 410 49.0
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.9e-101 373.6 398 48.7
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 2.4e-101 373.2 409 48.7
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 4.1e-101 372.5 411 48.7
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 4.1e-101 372.5 400 50.5
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 9.2e-101 371.3 399 47.1
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 9.2e-101 371.3 403 49.6
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 9.2e-101 371.3 397 49.9
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 9.2e-101 371.3 403 49.1
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.2e-100 370.9 404 50.7
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 2.1e-100 370.2 409 48.2
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 3.5e-100 369.4 404 48.3
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 4.6e-100 369.0 403 49.6
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 3.0e-99 366.3 403 48.6
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 8.6e-99 364.8 398 47.5
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 2.5e-98 363.2 404 50.0
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 2.1e-97 360.1 415 48.2
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 4.7e-97 359.0 397 46.3
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 8.1e-97 358.2 400 48.0
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.5e-95 354.0 398 48.2
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 5.8e-95 352.1 370 50.3
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 1.3e-94 350.9 402 46.0
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 4.9e-94 349.0 409 47.9
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 8.4e-94 348.2 402 46.5
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.4e-93 347.4 409 46.7
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 5.4e-93 345.5 400 47.5
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 1.5e-90 337.4 419 44.4
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 7.3e-90 335.1 396 45.5
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 6.9e-88 328.6 392 48.7
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 4.2e-85 319.3 403 44.9
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 7.1e-85 318.5 325 49.8
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 9.3e-85 318.2 301 55.8
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 2.1e-81 307.0 405 42.5
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 2.1e-81 307.0 409 42.3
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 1.8e-80 303.9 405 42.7
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 3.2e-77 293.1 416 41.1
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 4.2e-77 292.7 404 40.8
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.2e-76 291.2 420 39.0
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.6e-76 290.8 409 43.8
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.7e-76 290.0 409 44.0
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 2.3e-75 287.0 406 41.6
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.3e-75 287.0 403 39.2
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 3.9e-75 286.2 412 41.5
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 8.7e-75 285.0 415 39.5
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.9e-74 283.9 413 40.0
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 4.3e-74 282.7 397 41.1
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 2.8e-73 280.0 396 41.9
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 8.1e-73 278.5 406 39.2
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.6e-71 273.5 395 41.3
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.6e-68 264.2 392 43.4
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.6e-68 262.7 400 38.0
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 6.0e-68 262.3 406 39.2
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 7.9e-68 261.9 409 39.1
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 1.8e-67 260.8 368 41.0
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 3.1e-64 250.0 292 47.3
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 6.9e-64 248.8 256 50.0
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 8.5e-54 215.3 377 32.9
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 5.5e-53 212.6 396 34.8
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.7e-50 201.8 316 38.9
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 1.4e-43 181.4 292 40.4
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.6e-23 114.8 138 41.3
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 5.0e-22 109.8 160 40.0


User provided reference genes

Program Settings