Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.5e-107 392.9 198 100.0
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.2e-47 193.0 107 87.9
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 8.5e-47 191.0 107 86.0
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.4e-46 190.3 104 88.5
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 2.3e-44 183.0 104 85.6
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.1e-44 181.8 105 81.9
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.7e-44 181.4 106 79.2
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 8.8e-44 181.0 104 82.7
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.1e-43 180.6 104 82.7
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.5e-43 180.3 104 82.7
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.0e-43 179.9 104 81.7
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.0e-43 179.9 104 80.8
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.0e-43 179.9 104 82.7
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.0e-43 179.9 105 80.0
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.5e-43 179.5 104 80.8
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.5e-43 179.5 104 79.8
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.3e-43 179.1 104 79.8
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 3.3e-43 179.1 104 82.7
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.3e-43 179.1 104 82.7
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 4.3e-43 178.7 101 83.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 4.3e-43 178.7 104 79.8
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.4e-43 177.9 104 80.8
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.4e-43 177.9 104 80.8
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.4e-43 177.9 104 81.7
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.4e-43 177.9 104 81.7
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.3e-42 177.2 103 83.5
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.7e-42 176.8 104 79.8
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 2.8e-42 176.0 104 76.9
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 3.7e-42 175.6 104 77.9
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.7e-42 175.6 104 80.8
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 4.8e-42 175.3 104 77.9
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 6.3e-42 174.9 105 79.0
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 6.3e-42 174.9 104 77.9
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 6.3e-42 174.9 101 81.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 8.2e-42 174.5 104 78.8
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 8.2e-42 174.5 103 77.7
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.1e-41 174.1 101 80.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-41 174.1 104 79.8
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.4e-41 173.7 104 78.8
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.8e-41 173.3 104 76.9
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.1e-41 172.2 105 76.2
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 4.1e-41 172.2 104 76.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 5.3e-41 171.8 105 78.1
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.3e-41 171.8 105 76.2
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 6.9e-41 171.4 105 75.2
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 9.1e-41 171.0 104 77.9
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 9.1e-41 171.0 104 76.9
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.2e-40 170.6 101 80.2
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.2e-40 170.6 105 74.3
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.5e-40 170.2 105 74.3
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.5e-40 170.2 105 76.2
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-40 169.9 105 76.2
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.0e-40 169.9 105 76.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.6e-40 169.5 104 76.0
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.6e-40 169.5 105 74.3
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.6e-40 169.5 105 75.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 4.5e-40 168.7 104 76.0
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 4.5e-40 168.7 105 74.3
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.9e-40 168.3 105 73.3
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.9e-40 168.3 104 76.9
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 7.7e-40 167.9 103 74.8
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 7.7e-40 167.9 103 74.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 7.7e-40 167.9 103 74.8
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 7.7e-40 167.9 101 78.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-39 167.5 103 74.8
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.0e-39 167.5 103 74.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.0e-39 167.5 104 74.0
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.0e-39 167.5 103 74.8
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.3e-39 167.2 101 78.2
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.3e-39 167.2 100 82.0
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.7e-39 166.8 104 75.0
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.2e-39 166.4 105 74.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-39 166.4 105 75.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.9e-39 166.0 103 75.7
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 3.8e-39 165.6 105 74.3
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 6.5e-39 164.9 103 72.8
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 6.5e-39 164.9 103 72.8
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 6.5e-39 164.9 104 74.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.1e-38 164.1 104 72.1
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-38 164.1 104 74.0
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.1e-38 164.1 101 77.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-38 163.7 101 78.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.9e-38 163.3 101 77.2
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.9e-38 163.3 101 78.2
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.2e-38 162.5 89 87.6
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 4.2e-38 162.2 100 75.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 4.2e-38 162.2 101 77.2
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 4.2e-38 162.2 98 76.5
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 4.2e-38 162.2 105 69.5
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.5e-38 161.8 94 81.9
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 5.5e-38 161.8 100 74.0
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 2.1e-37 159.8 105 72.4
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.7e-37 159.5 94 79.8
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 3.6e-37 159.1 105 72.4
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 6.1e-37 158.3 101 70.3
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.1e-37 158.3 105 72.4
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-36 157.1 101 69.3
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.4e-36 157.1 101 69.3
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 5.1e-36 155.2 101 73.3
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 6.7e-36 154.8 101 70.3
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.0e-35 153.3 100 72.0
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.6e-35 152.9 106 71.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 7.4e-35 151.4 103 67.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.3e-34 150.6 105 72.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.7e-34 150.2 108 69.4
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.1e-33 146.0 98 71.4
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.1e-33 145.6 107 66.4
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.2e-32 144.1 82 84.1
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.6e-32 143.7 122 62.3
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.6e-32 142.9 85 76.5
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.5e-32 142.5 94 72.3
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.9e-32 141.7 82 84.1
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 5.9e-32 141.7 103 68.0
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.0e-31 141.0 82 82.9
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 3.8e-31 139.0 103 67.0
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.8e-31 139.0 83 79.5
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 5.0e-31 138.7 80 80.0
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 6.5e-31 138.3 82 80.5
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 8.5e-31 137.9 96 69.8
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.5e-30 137.1 105 62.9
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 9.4e-30 134.4 105 63.8
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.8e-28 130.2 82 73.2
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.8e-28 130.2 82 73.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-28 130.2 104 61.5
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 2.3e-28 129.8 104 63.5
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 3.0e-28 129.4 79 75.9
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 3.0e-28 129.4 81 74.1
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.5e-27 127.1 105 60.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.5e-27 127.1 107 61.7
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.0e-27 126.7 102 63.7
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 7.5e-27 124.8 104 62.5
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 9.7e-27 124.4 88 63.6
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.3e-26 124.0 104 61.5
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 8.2e-26 121.3 101 54.5
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.4e-25 119.8 90 65.6
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 2.9e-23 112.8 107 45.8
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 8.5e-23 111.3 101 51.5
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 3.2e-22 109.4 104 53.8
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 4.2e-22 109.0 105 48.6
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.6e-21 107.1 101 49.5
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.1e-21 106.7 101 49.5
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 3.6e-21 105.9 101 49.5
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.7e-21 105.5 98 58.2
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 6.1e-21 105.1 105 51.4
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.0e-20 104.4 109 49.5
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.8e-20 103.6 107 52.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 6.8e-20 101.7 101 50.5
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.2e-19 100.9 72 69.4
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.2e-19 100.9 101 47.5
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.0e-19 100.1 115 47.0
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 4.4e-19 99.0 69 69.6
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.1e-17 94.4 55 78.2
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.4e-17 92.0 60 73.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 7.5e-11 71.6 45 68.9
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.6e-08 63.9 34 82.4
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 4.5e-08 62.4 52 48.1
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 1.7e-07 60.5 59 50.8


User provided reference genes

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