Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22560 Beta vulgaris HOM05D001033 ORTHO05D002045 1.2e-36 156.0 78 100.0
EL10Ac5g11543 Beta vulgaris HOM05D001033 ORTHO05D002045 1.1e-26 122.9 78 82.1
EL10Ac5g11542 Beta vulgaris HOM05D001033 ORTHO05D002045 1.8e-24 115.5 57 98.2
EL10Ac5g11544 Beta vulgaris HOM05D001183 ORTHO05D021154 3.3e-18 94.7 45 97.8
EL10Ac5g12234 Beta vulgaris HOM05D001033 ORTHO05D002045 2.9e-14 81.6 59 76.3
Oeu029406.1 Olea europaea HOM05D001033 ORTHO05D002045 6.6e-11 70.5 36 88.9
Atru.chr7.1038 Acer truncatum HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Aa31LG3G15430 Aethionema arabicum HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Ah.10g034470 Amaranthus hybridus HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
MSTRG.11667 Avicennia marina HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
EL10Ac2g03916 Beta vulgaris HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Carub.0006s1030 Capsella rubella HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
CiPaw.15G040400 Carya illinoinensis HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
ECA240G1938 Erigeron canadensis HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Migut.A00145 Erythranthe guttata HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Glyma.06G051400 Glycine max HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
HanXRQChr03g0079051 Helianthus annuus HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
HanXRQChr13g0410711 Helianthus annuus HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Lsat_1_v5_gn_5_48820 Lactuca sativa HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Hund00755 Selenicereus undatus HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
SGA_v2.0_scaffold88G27222 Striga asiatica HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
THA.LOC104799172 Tarenaya hassleriana HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
THA.LOC104811248 Tarenaya hassleriana HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
unitig_88.g27684 Utricularia gibba HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
VMungo1309G1193 Vigna mungo HOM05D001033 ORTHO05D002045 1.9e-10 68.9 36 86.1
Glyma.04G050600 Glycine max HOM05D001033 ORTHO05D002045 2.5e-10 68.6 36 83.3
CSS0046399 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
CSS0046941 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
Dinv23430 Davidia involucrata HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
Dinv27974 Davidia involucrata HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
Nitab4.5_0005816g0040 Nicotiana tabacum HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
Sed0000213 Sechium edule HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
Sed0018803 Sechium edule HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
Sc23g0005560 Simmondsia chinensis HOM05D001033 ORTHO05D002045 3.3e-10 68.2 36 83.3
Aqoxy7G04071 Aquilegia oxysepala HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
COL.COLO4_21038 Corchorus olitorius HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
Duzib150G0652 Durio zibethinus HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
Os01g0720300 Oryza sativa ssp. japonica HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
TWI32G1281 Tripterygium wilfordii HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
TWI34G1483 Tripterygium wilfordii HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
unitig_0.g2564 Utricularia gibba HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
Zm00001eb154640 Zea mays HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
Zm00001eb361610 Zea mays HOM05D001033 ORTHO05D002045 4.3e-10 67.8 36 83.3
CARHR201420 Cardamine hirsuta HOM05D001033 ORTHO05D002045 5.6e-10 67.4 36 83.3
Ca_15867_v3 Cicer arietinum L. HOM05D001033 ORTHO05D002045 5.6e-10 67.4 36 83.3
Lj1g0008257 Lotus japonicus HOM05D001033 ORTHO05D002045 5.6e-10 67.4 36 83.3
Manes.16G078900 Manihot esculenta HOM05D001033 ORTHO05D002045 5.6e-10 67.4 36 83.3
Medtr3g104310 Medicago truncatula HOM05D001033 ORTHO05D002045 5.6e-10 67.4 36 83.3
TPR.G3591 Trifolium pratense HOM05D001033 ORTHO05D002045 5.6e-10 67.4 36 83.3
GSVIVG01035355001 Vitis vinifera HOM05D001033 ORTHO05D002045 5.6e-10 67.4 36 83.3
AL6G22520 Arabidopsis lyrata HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
AT5G11770 Arabidopsis thaliana HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BcaB01g05455 Brassica carinata HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BcaC04g19196 Brassica carinata HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BcaNung02654 Brassica carinata HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
A02p01190 Brassica napus HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
A03p05190 Brassica napus HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
A10p25970 Brassica napus HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
C03p05990 Brassica napus HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
C09p65050 Brassica napus HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BolC3t13110H Brassica oleracea HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BolC9t59333H Brassica oleracea HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BraA02t05098Z Brassica rapa HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BraA03t09858Z Brassica rapa HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
BraA10t44659Z Brassica rapa HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
AUR62009167 Chenopodium quinoa HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
AUR62022056 Chenopodium quinoa HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
Ciclev10026474m.g Citrus clementina HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 80.6
Thhalv10014642m.g Eutrema salsugineum HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
Sp6g31830 Schrenkiella parvula HOM05D001033 ORTHO05D002045 7.3e-10 67.0 36 83.3
CANSAT11G1663 Cannabis sativa HOM05D001033 ORTHO05D002045 9.5e-10 66.6 36 83.3
CAN.G309.55 Capsicum annuum HOM05D001033 ORTHO05D002045 9.5e-10 66.6 36 86.1
Cc04_g02140 Coffea canephora HOM05D001033 ORTHO05D002045 9.5e-10 66.6 36 80.6
Nitab4.5_0001967g0030 Nicotiana tabacum HOM05D001033 ORTHO05D002045 9.5e-10 66.6 36 83.3
Phvul.009G076900 Phaseolus vulgaris HOM05D001033 ORTHO05D002045 9.5e-10 66.6 36 80.6
Duzib168G0013 Durio zibethinus HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Duzib187G1343 Durio zibethinus HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Gohir.A06G088400 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Gohir.A07G022136 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Gohir.D06G088300 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Gohir.D07G022800 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Gorai.001G023500 Gossypium raimondii HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Gorai.010G102000 Gossypium raimondii HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Manes.03G046900 Manihot esculenta HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 83.3
Manes.11G028300 Manihot esculenta HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 77.8
Peaxi162Scf00038g01323 Petunia axillaris HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
QL02p001432 Quercus lobata HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
HPP92_008639 Vanilla planifolia HOM05D001033 ORTHO05D002045 1.2e-09 66.2 36 80.6
Cc08_g10410 Coffea canephora HOM05D001033 ORTHO05D002045 1.6e-09 65.9 36 80.6
Potri.006G231701 Populus trichocarpa HOM05D001033 ORTHO05D002045 1.6e-09 65.9 36 80.6
Sabra06G0179700 Salix brachista HOM05D001033 ORTHO05D002045 1.6e-09 65.9 36 80.6
SalBow1G7001 Salvia bowleyana HOM05D001033 ORTHO05D002045 1.6e-09 65.9 36 80.6
Thecc.09G052200 Theobroma cacao HOM05D001033 ORTHO05D002045 1.6e-09 65.9 36 80.6
CANSAT25G0039 Cannabis sativa HOM05D001033 ORTHO05D002045 2.1e-09 65.5 36 80.6
Hund03349 Selenicereus undatus HOM05D001033 ORTHO05D002045 2.1e-09 65.5 36 80.6
ClCG05G017770 Citrullus lanatus HOM05D001033 ORTHO05D002045 2.8e-09 65.1 36 80.6
MELO3C016861.2 Cucumis melo HOM05D001033 ORTHO05D002045 2.8e-09 65.1 36 80.6
CsaV3_4G035540 Cucumis sativus L. HOM05D001033 ORTHO05D002045 2.8e-09 65.1 36 80.6
DCAR_004436 Daucus carota HOM05D001033 ORTHO05D002045 2.8e-09 65.1 36 83.3
arahy.Tifrunner.gnm1.ann1.0Y1MFM Arachis hypogaea HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
arahy.Tifrunner.gnm1.ann1.W3D2I3 Arachis hypogaea HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
FvH4_2g32100 Fragaria vesca HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
FAN15G1414 Fragaria x ananassa HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
FAN20G0898 Fragaria x ananassa HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
FAN24G1263 Fragaria x ananassa HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
FAN27G0170 Fragaria x ananassa HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
Lj7A279G24 Lonicera japonica HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
Lalb_Chr14g0367801 Lupinus albus HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
Lalb_Chr22g0356051 Lupinus albus HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
Lalb_Chr24g0399621 Lupinus albus HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
MD08G1044100 Malus domestica HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
MD15G1061400 Malus domestica HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
Os05g0533700 Oryza sativa ssp. japonica HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 77.8
Prupe.1G414100 Prunus persica HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
RcHm_v2.0_Chr6g0310641 Rosa chinensis HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
TAR624G0653 Trochodendron aralioides HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 83.3
TAR624G1164 Trochodendron aralioides HOM05D001443 ORTHO05D001352 3.6e-09 64.7 36 83.3
VMungo0647G2366 Vigna mungo HOM05D001033 ORTHO05D002045 3.6e-09 64.7 36 80.6
CAN.G1668.13 Capsicum annuum HOM05D001033 ORTHO05D002045 4.7e-09 64.3 35 80.0
Nitab4.5_0001584g0070 Nicotiana tabacum HOM05D001033 ORTHO05D002045 4.7e-09 64.3 36 80.6
Solyc11g070030.2 Solanum lycopersicum HOM05D001033 ORTHO05D002045 4.7e-09 64.3 36 80.6
Sopen11g028710 Solanum pennellii HOM05D001033 ORTHO05D002045 4.7e-09 64.3 36 80.6
Actinidia14706 Actinidia chinensis HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
Glyma.14G093300 Glycine max HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
Nitab4.5_0001107g0150 Nicotiana tabacum HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
Nitab4.5_0001179g0100 Nicotiana tabacum HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
Nitab4.5_0003550g0040 Nicotiana tabacum HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
Peaxi162Scf00136g00619 Petunia axillaris HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
Peaxi162Scf00247g00614 Petunia axillaris HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
Phvul.001G033900 Phaseolus vulgaris HOM05D001033 ORTHO05D002045 6.2e-09 63.9 36 80.6
ATR0763G079 Amborella trichopoda HOM05D001033 ORTHO05D002045 8.0e-09 63.5 36 80.6
CDE02G3778 Ceratophyllum demersum HOM05D001033 ORTHO05D002045 8.0e-09 63.5 36 80.6
CDE04G1898 Ceratophyllum demersum HOM05D001033 ORTHO05D002045 8.0e-09 63.5 36 80.6
CDE07G1408 Ceratophyllum demersum HOM05D001033 ORTHO05D002045 8.0e-09 63.5 36 80.6
SEGI_18820 Sequoiadendron giganteum HOM05D001033 ORTHO05D002045 8.0e-09 63.5 36 80.6
Eucgr.C00638 Eucalyptus grandis HOM05D001033 ORTHO05D002045 1.0e-08 63.2 36 80.6
Hma1.2p1_0450F.1_g155600 Hydrangea macrophylla HOM05D001033 ORTHO05D002045 1.4e-08 62.8 35 82.9
Cfa017943 Carpinus fangiana HOM05D001033 ORTHO05D002045 1.8e-08 62.4 36 80.6
Haze_18205 Corylus avellana HOM05D001033 ORTHO05D002045 1.8e-08 62.4 36 80.6
TAR636G0841 Trochodendron aralioides HOM05D001229 ORTHO05D001374 1.8e-08 62.4 36 77.8
Rhsim07G0143200 Rhododendron simsii HOM05D001033 ORTHO05D002045 3.1e-08 61.6 36 77.8
Pp3c15_14890 Physcomitrium patens HOM05D001033 ORTHO05D002045 4.0e-08 61.2 36 77.8
Pp3c15_20620 Physcomitrium patens HOM05D001033 ORTHO05D002045 4.0e-08 61.2 36 77.8
PGR031G2750 Punica granatum HOM05D001033 ORTHO05D002045 4.0e-08 61.2 36 77.8
Mapoly0042s0039 Marchantia polymorpha HOM05D001033 ORTHO05D002045 5.2e-08 60.8 36 77.8
Actinidia01197 Actinidia chinensis HOM05D001033 ORTHO05D002045 8.9e-08 60.1 36 75.0
PSO063G7417 Papaver somniferum HOM05D001033 ORTHO05D002045 1.2e-07 59.7 36 75.0
PSO832G2727 Papaver somniferum HOM05D001033 ORTHO05D002045 1.2e-07 59.7 36 75.0
QL05p015451 Quercus lobata HOM05D001033 ORTHO05D002045 4.4e-07 57.8 34 70.6
QL05p015480 Quercus lobata HOM05D001033 ORTHO05D002045 4.4e-07 57.8 34 70.6
QL05p016066 Quercus lobata HOM05D001033 ORTHO05D002045 4.4e-07 57.8 34 70.6
QL05p016099 Quercus lobata HOM05D001033 ORTHO05D002045 4.4e-07 57.8 34 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1926 Anthoceros agrestis HOM05D001033 ORTHO05D002045 1.7e-06 55.8 36 75.0
CBR_g41644 Chara braunii HOM05D001033 ORTHO05D002045 2.2e-06 55.5 36 69.4
SMO367G0380 Selaginella moellendorffii HOM05D001033 ORTHO05D002045 2.2e-06 55.5 36 69.4
ATR0099G008 Amborella trichopoda HOM05D001033 ORTHO05D002045 4.9e-06 54.3 36 69.4


User provided reference genes

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