Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 4.9e-285 983.8 501 100.0
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.5e-212 742.3 501 77.6
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 8.3e-208 727.2 501 76.6
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 5.1e-173 611.7 498 63.7
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 2.5e-164 582.8 463 64.4
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 5.6e-164 581.6 467 64.7
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 9.6e-164 580.9 466 64.4
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 9.6e-164 580.9 504 60.9
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 7.6e-161 571.2 468 63.2
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 1.7e-160 570.1 463 62.9
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 2.9e-160 569.3 491 61.3
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 4.9e-160 568.5 465 63.9
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.9e-159 566.6 480 61.2
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 5.5e-159 565.1 464 62.9
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 2.7e-158 562.8 454 63.4
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 6.0e-158 561.6 474 62.7
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.0e-157 560.8 470 62.1
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.0e-157 560.8 457 64.3
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.8e-157 560.1 463 63.7
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 3.0e-157 559.3 461 64.0
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.0e-157 559.3 456 64.5
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.9e-157 558.9 464 62.3
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.1e-156 557.4 468 61.5
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.1e-156 557.4 534 57.3
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 2.5e-156 556.2 466 63.7
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.5e-156 556.2 466 63.7
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.5e-156 556.2 467 60.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 3.3e-156 555.8 475 62.3
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 4.3e-156 555.4 469 62.7
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 5.6e-156 555.1 470 62.8
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 7.4e-156 554.7 466 63.5
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.6e-155 553.5 470 62.8
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 4.8e-155 552.0 468 62.0
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 6.2e-155 551.6 459 61.2
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.1e-154 550.8 467 60.2
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.1e-154 550.8 473 60.0
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.4e-154 550.4 466 63.1
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.0e-154 548.9 471 62.2
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 9.0e-154 547.7 456 64.0
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 7.6e-153 544.7 468 61.1
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.2e-152 543.1 468 60.0
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 2.2e-152 543.1 468 59.8
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 3.8e-152 542.3 457 63.2
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 6.5e-152 541.6 463 62.2
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.9e-151 540.0 468 59.8
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 4.2e-151 538.9 464 61.4
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 4.2e-151 538.9 460 62.6
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.6e-150 537.0 477 59.3
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.3e-149 533.9 484 57.6
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 6.7e-149 531.6 467 60.2
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 8.7e-149 531.2 460 62.2
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.5e-148 530.4 467 59.7
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 5.7e-148 528.5 460 62.0
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.3e-147 527.3 460 61.7
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 2.2e-147 526.6 468 57.7
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.4e-146 523.9 454 59.7
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 4.1e-146 522.3 465 58.3
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 5.9e-145 518.5 474 57.4
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 6.5e-144 515.0 463 59.8
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 8.5e-144 514.6 462 56.9
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 8.5e-144 514.6 463 59.4
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.5e-143 513.1 469 58.8
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 7.2e-143 511.5 474 56.8
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.6e-142 510.4 461 57.0
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.6e-142 508.8 469 60.3
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 4.6e-142 508.8 461 57.0
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.0e-141 507.7 466 57.3
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 5.1e-141 505.4 459 57.3
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 2.5e-140 503.1 484 54.8
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 6.3e-139 498.4 453 58.1
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 6.3e-139 498.4 459 59.7
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.8e-138 496.9 464 56.0
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.4e-138 496.5 462 57.4
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 9.1e-138 494.6 459 56.6
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 2.6e-137 493.0 462 55.6
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 2.6e-137 493.0 462 56.9
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.3e-136 490.7 464 55.4
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 3.8e-136 489.2 466 55.2
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 6.5e-136 488.4 471 54.4
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 8.5e-136 488.0 472 53.8
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.5e-135 485.3 454 56.4
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 7.2e-135 485.0 478 55.0
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.2e-134 484.2 463 55.3
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 1.2e-134 484.2 463 54.9
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 1.2e-134 484.2 463 54.9
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.2e-134 484.2 478 53.8
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.6e-134 483.8 459 55.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.7e-134 482.3 470 55.1
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 7.9e-134 481.5 466 54.9
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.4e-133 480.7 463 55.1
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.4e-133 480.7 460 56.5
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 4.4e-132 475.7 461 56.2
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.7e-131 473.8 466 54.3
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 2.2e-131 473.4 466 54.3
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 8.2e-131 471.5 462 54.1
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.1e-130 471.1 463 54.9
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 2.4e-130 469.9 467 54.0
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 4.1e-130 469.2 456 55.0
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 7.0e-130 468.4 460 53.7
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 2.0e-129 466.8 458 56.1
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 2.0e-129 466.8 468 55.1
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 2.6e-129 466.5 458 55.9
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.6e-129 466.5 455 53.8
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.5e-127 459.9 456 52.9
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 4.2e-127 459.1 447 54.6
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.2e-126 457.6 465 54.0
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.7e-126 455.7 456 52.6
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.1e-124 451.1 456 55.7
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 6.3e-123 445.3 476 51.5
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 8.5e-120 434.9 461 50.1
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.2e-118 431.0 404 56.7
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 3.7e-115 419.5 460 52.4
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.8e-114 417.2 338 66.9
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 3.1e-114 416.4 416 54.1
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.2e-111 406.0 402 56.5
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 4.7e-110 402.5 381 57.2
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 3.4e-108 396.4 447 52.8
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 5.7e-108 395.6 352 57.7
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 2.9e-104 383.3 472 46.2
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 5.5e-103 379.0 369 56.1
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 5.5e-103 379.0 481 48.2
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 9.2e-98 361.7 366 51.4
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.6e-95 352.4 457 45.1
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-94 350.9 328 55.2
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.4e-93 347.8 485 41.4
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 3.9e-88 329.7 324 53.4
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 2.1e-86 323.9 481 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.0e-84 317.4 518 38.0
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.2e-78 298.1 180 76.7
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.3e-72 278.1 328 47.6
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 3.0e-72 276.9 260 54.2
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 4.7e-70 269.6 181 71.3
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.6e-68 263.8 236 62.3
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.3e-67 261.5 472 35.8
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 4.2e-66 256.5 321 44.9
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.5e-63 248.1 236 56.8
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 3.4e-52 210.3 215 54.9
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 3.3e-47 193.7 163 62.0
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 8.2e-38 162.5 336 32.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 5.3e-37 159.8 131 63.4
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.4e-34 151.8 469 26.4
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.1e-31 142.1 89 74.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.0e-27 129.0 207 37.7
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 6.1e-25 119.8 84 64.3
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 1.2e-20 105.5 112 49.1
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.9e-18 98.2 129 47.3
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 7.2e-18 96.3 89 55.1
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 3.9e-16 90.5 65 63.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 8.8e-16 89.4 68 58.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 2.0e-15 88.2 65 61.5
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.0e-12 78.2 57 68.4
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 7.2e-10 69.7 46 65.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 2.8e-06 57.8 404 21.5
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 6.3e-06 56.6 31 74.2


User provided reference genes

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