Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 3.5e-186 654.8 334 100.0
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 2.1e-138 496.1 285 87.4
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 5.1e-137 491.5 310 80.6
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.8e-133 478.0 290 84.5
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.0e-132 477.2 290 84.5
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.8e-126 456.4 285 80.7
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 8.2e-119 431.0 285 74.0
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 1.1e-118 430.6 283 75.3
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.4e-118 430.3 291 74.9
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.8e-118 429.9 295 75.6
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.8e-118 429.9 294 74.8
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.4e-118 429.5 285 74.7
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.4e-118 429.5 285 74.7
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 3.1e-118 429.1 284 76.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 4.1e-118 428.7 286 75.2
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.1e-118 428.7 286 74.8
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 4.1e-118 428.7 291 74.6
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 5.3e-118 428.3 289 73.4
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 2.6e-117 426.0 284 73.9
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 2.6e-117 426.0 285 73.3
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 3.4e-117 425.6 283 76.0
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.5e-117 425.2 284 73.9
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 5.9e-117 424.9 285 73.3
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 7.7e-117 424.5 285 73.7
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 1.0e-116 424.1 287 73.9
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.0e-116 424.1 289 73.7
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.7e-116 423.3 289 74.4
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.7e-116 423.3 285 74.4
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 3.8e-116 422.2 291 73.5
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 5.0e-116 421.8 285 73.7
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 6.5e-116 421.4 285 73.3
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 6.5e-116 421.4 294 72.4
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 8.5e-116 421.0 285 73.7
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.1e-115 420.6 284 73.9
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 4.2e-115 418.7 285 72.6
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 5.5e-115 418.3 292 73.3
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 5.5e-115 418.3 284 73.6
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.2e-114 417.2 287 72.5
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.6e-114 416.8 275 75.3
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.1e-114 416.4 285 72.6
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.1e-114 416.4 285 71.6
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 2.7e-114 416.0 285 72.3
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 2.7e-114 416.0 290 73.1
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.6e-114 415.6 284 72.9
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.6e-114 415.6 284 73.2
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 6.1e-114 414.8 290 72.8
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 7.9e-114 414.5 303 69.0
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 7.9e-114 414.5 285 71.2
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.4e-113 413.7 287 71.8
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 3.0e-113 412.5 285 73.0
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 3.9e-113 412.1 289 71.3
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 3.9e-113 412.1 292 70.5
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.1e-113 411.8 303 68.3
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 5.1e-113 411.8 287 70.4
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 5.1e-113 411.8 285 71.6
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 6.7e-113 411.4 288 71.9
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 6.7e-113 411.4 285 71.2
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 8.8e-113 411.0 289 71.3
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 1.5e-112 410.2 285 70.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.5e-112 410.2 291 71.5
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.5e-112 410.2 287 69.7
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.0e-112 409.8 285 71.9
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.0e-112 409.8 285 70.9
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 2.0e-112 409.8 285 71.2
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 2.6e-112 409.5 330 65.2
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 4.4e-112 408.7 287 70.4
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 4.4e-112 408.7 289 71.3
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 5.7e-112 408.3 285 71.6
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 9.7e-112 407.5 307 67.1
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 9.7e-112 407.5 285 70.5
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.3e-111 407.1 282 72.7
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 6.3e-111 404.8 278 73.4
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.8e-110 403.3 285 70.5
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.8e-110 403.3 289 69.6
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 3.1e-110 402.5 286 71.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 4.1e-110 402.1 288 68.4
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 9.1e-110 401.0 290 70.0
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 2.6e-109 399.4 262 76.0
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 2.6e-109 399.4 283 71.4
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 2.6e-109 399.4 289 68.9
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 4.5e-109 398.7 290 67.2
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 5.0e-108 395.2 285 69.1
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 8.5e-108 394.4 270 72.2
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.9e-107 393.3 284 69.0
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 2.5e-107 392.9 284 68.3
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 3.2e-107 392.5 285 68.8
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 5.5e-107 391.7 284 68.7
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 5.5e-107 391.7 284 68.0
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.2e-107 391.3 289 67.5
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.2e-106 390.6 284 68.3
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.2e-106 390.6 284 68.3
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.2e-106 390.6 285 67.7
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 2.1e-106 389.8 275 70.9
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 2.1e-106 389.8 277 70.4
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 4.7e-106 388.7 284 66.5
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 8.0e-106 387.9 284 68.3
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 8.0e-106 387.9 284 67.6
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.0e-105 387.5 284 66.2
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.4e-105 387.1 287 65.9
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-105 385.2 287 68.3
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-104 384.0 287 68.3
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 3.3e-104 382.5 271 70.5
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.3e-104 382.5 283 67.5
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 1.3e-103 380.6 264 72.0
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 1.4e-102 377.1 270 69.6
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.1e-102 375.6 250 74.4
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 5.0e-100 368.6 284 65.1
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 4.2e-99 365.5 289 64.7
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 7.0e-94 348.2 295 64.7
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.6e-93 347.1 226 75.7
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.2e-91 339.0 315 57.5
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 2.6e-88 329.7 219 74.4
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.4e-88 329.3 284 56.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.8e-87 326.2 288 56.2
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.5e-85 318.9 272 57.7
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 5.9e-85 318.5 305 53.8
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.0e-84 317.8 289 57.4
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 9.5e-83 311.2 272 56.6
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 9.5e-83 311.2 262 57.3
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 8.0e-82 308.1 214 72.0
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 6.8e-81 305.1 211 72.0
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.5e-80 303.9 276 56.9
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.1e-78 297.7 215 69.8
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.5e-77 292.7 262 59.9
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.9e-76 289.3 276 58.7
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 3.3e-75 286.2 223 65.5
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-67 261.2 237 60.3
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 8.1e-66 255.0 235 54.5
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 2.1e-58 230.3 169 68.0
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 1.4e-57 227.6 150 77.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 4.9e-55 219.2 167 65.9
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.6e-53 214.2 162 64.2
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 6.2e-50 202.2 143 66.4
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.1e-50 201.8 194 56.7
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-47 194.1 139 67.6
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.9e-43 180.6 122 69.7
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 2.8e-42 176.8 282 34.8
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.6e-34 151.0 276 34.1
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 8.1e-34 148.7 174 47.1
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-33 147.9 145 55.9
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 8.4e-31 138.7 98 71.4
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.3e-28 131.3 99 60.6
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.3e-28 130.6 93 69.9
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-24 118.2 103 62.1
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 3.8e-23 113.2 270 27.4
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 3.2e-22 110.2 126 53.2
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.3e-20 104.8 64 79.7
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-18 98.2 113 53.1
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.9e-14 84.3 69 56.5
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 5.5e-14 82.8 113 45.1
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-12 78.2 113 43.4
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 1.4e-09 68.2 100 43.0
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 9.1e-09 65.5 52 65.4
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 9.1e-09 65.5 59 61.0


User provided reference genes

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