Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.8e-207 725.7 364 100.0
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 6.4e-133 478.0 367 70.8
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 8.3e-125 451.1 411 62.8
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.6e-112 410.2 441 54.6
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.7e-107 392.9 389 55.0
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 5.6e-105 385.2 360 56.1
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.8e-103 380.2 388 53.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 3.1e-103 379.4 388 52.6
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 4.0e-103 379.0 382 54.5
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 5.8e-102 375.2 373 52.5
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 4.9e-101 372.1 397 50.6
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 4.9e-101 372.1 405 50.1
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 8.4e-101 371.3 400 50.2
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.9e-100 370.2 412 50.0
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 7.1e-100 368.2 400 49.0
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 6.0e-99 365.2 397 50.6
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.0e-98 364.4 395 50.1
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.3e-98 364.0 394 50.8
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 1.8e-98 363.6 385 50.4
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.9e-98 362.5 403 50.9
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 6.7e-98 361.7 377 51.2
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.3e-97 359.0 392 49.7
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 4.3e-97 359.0 390 50.8
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 9.6e-97 357.8 410 48.5
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.6e-96 357.1 392 49.5
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.4e-95 354.0 397 50.1
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.4e-95 354.0 397 49.6
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 2.4e-95 353.2 403 49.6
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.4e-95 353.2 369 50.9
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 9.0e-95 351.3 380 49.2
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 9.0e-95 351.3 393 48.6
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 9.0e-95 351.3 353 52.1
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.5e-94 350.5 397 49.1
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.5e-94 350.5 383 49.9
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.0e-93 347.8 411 47.9
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 2.9e-93 346.3 397 48.6
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.1e-92 344.4 387 49.4
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 4.2e-92 342.4 407 45.9
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 4.2e-92 342.4 350 54.6
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.6e-91 340.5 388 47.4
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.6e-91 340.5 354 48.9
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 2.1e-91 340.1 394 47.7
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 2.7e-91 339.7 377 47.7
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 2.7e-91 339.7 379 48.0
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 6.0e-91 338.6 362 50.8
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.9e-90 335.9 400 47.5
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.9e-89 333.6 419 45.8
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.3e-88 330.9 295 55.3
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.6e-88 330.5 396 49.0
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 3.7e-88 329.3 411 46.5
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 3.7e-88 329.3 383 48.6
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 8.2e-88 328.2 391 47.8
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.1e-87 327.8 399 46.4
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.4e-87 327.4 366 48.1
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 1.8e-87 327.0 243 63.8
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 4.0e-87 325.9 385 47.5
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 7.6e-86 321.6 324 54.3
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 7.6e-86 321.6 332 54.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 3.8e-85 319.3 358 50.8
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 4.9e-85 318.9 405 45.2
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 6.5e-85 318.5 368 48.4
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 3.2e-84 316.2 359 47.1
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.0e-82 311.2 412 43.0
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 8.7e-82 308.1 375 44.3
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 1.1e-81 307.8 413 42.6
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 2.5e-81 306.6 334 50.9
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 5.7e-81 305.4 391 44.8
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 4.8e-80 302.4 400 42.8
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 6.3e-80 302.0 357 47.6
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.4e-79 300.8 402 43.8
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 5.3e-79 298.9 378 46.8
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 9.0e-79 298.1 359 48.2
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.5e-78 297.4 307 53.4
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 4.5e-78 295.8 390 42.8
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.3e-77 294.3 327 52.3
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 2.2e-77 293.5 351 47.9
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 2.2e-77 293.5 413 41.6
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.9e-77 293.1 401 44.4
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-76 291.2 343 46.9
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.1e-76 291.2 381 45.4
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.9e-76 290.4 424 41.3
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.2e-76 289.7 273 52.4
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.6e-75 286.2 382 44.5
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.4e-74 284.3 399 42.4
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.8e-74 283.9 382 44.2
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.3e-74 283.5 406 42.4
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 8.8e-74 281.6 381 44.6
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.0e-73 280.4 414 42.8
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 2.0e-73 280.4 410 42.9
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 4.3e-73 279.3 410 42.7
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 5.7e-73 278.9 372 43.8
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 4.8e-72 275.8 390 41.8
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 6.3e-72 275.4 377 42.4
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 8.2e-72 275.0 385 42.9
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 4.1e-71 272.7 300 48.0
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 9.1e-71 271.6 353 43.1
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.2e-70 271.2 304 47.4
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 3.4e-70 269.6 370 43.0
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 3.2e-68 263.1 402 40.0
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.5e-68 262.3 381 42.5
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 9.4e-68 261.5 392 42.3
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 2.7e-67 260.0 229 54.1
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 3.9e-66 256.1 390 39.7
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.5e-65 254.2 392 39.3
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.4e-65 252.7 356 42.7
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 7.4e-65 251.9 314 42.7
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 2.8e-64 250.0 283 47.7
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 7.7e-62 241.9 384 38.5
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.3e-61 241.1 182 67.6
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.7e-61 240.7 334 42.2
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 8.5e-61 238.4 324 41.7
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-59 234.6 245 55.5
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 2.3e-58 230.3 353 38.5
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.9e-58 229.6 271 45.8
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.5e-57 227.6 373 41.0
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 2.0e-54 217.2 281 47.0
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 3.6e-51 206.5 358 35.8
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 2.8e-48 196.8 292 39.7
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 4.1e-47 193.0 194 49.0
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.0e-45 188.3 214 52.3
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 6.1e-43 179.1 198 46.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 8.0e-43 178.7 209 47.8
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.8e-42 177.6 101 86.1
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.8e-40 170.2 224 44.6
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.3e-40 168.7 101 80.2
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 3.6e-35 153.3 190 43.7
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 9.2e-31 138.7 112 56.2
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 2.0e-30 137.5 139 46.8
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 2.0e-22 110.9 150 50.0
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.5e-22 110.2 77 68.8
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 6.0e-22 109.4 91 63.7
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.6e-19 101.3 89 56.2
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 6.4e-16 89.4 109 37.6
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.2e-14 85.1 109 35.8
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 8.6e-13 79.0 109 34.9
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 8.1e-11 72.4 97 40.2
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.4e-09 66.6 94 40.4
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.3e-08 65.1 84 40.5
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 4.6e-06 56.6 126 43.7


User provided reference genes

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