Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22302 Beta vulgaris HOM05D002207 ORTHO05D002250 1.0e-60 236.5 118 100.0
Ah.01g018060 Amaranthus hybridus HOM05D002207 ORTHO05D002250 4.6e-08 61.6 64 50.0
Nn5g30400 Nelumbo nucifera HOM05D002207 ORTHO05D002250 6.0e-08 61.2 64 48.4
FAN15G3663 Fragaria x ananassa HOM05D002207 ORTHO05D002250 1.0e-07 60.5 64 50.0
Sc08g0001490 Simmondsia chinensis HOM05D002207 ORTHO05D002250 1.3e-07 60.1 65 47.7
TWI75G0770 Tripterygium wilfordii HOM05D002207 ORTHO05D002250 1.3e-07 60.1 64 50.0
Aqoxy6G02889 Aquilegia oxysepala HOM05D002207 ORTHO05D002250 1.8e-07 59.7 64 46.9
CiPaw.05G010300 Carya illinoinensis HOM05D002207 ORTHO05D002250 1.8e-07 59.7 64 48.4
COL.COLO4_32607 Corchorus olitorius HOM05D002207 ORTHO05D002250 2.3e-07 59.3 64 48.4
CsaV3_7G008290 Cucumis sativus L. HOM05D002207 ORTHO05D002250 2.3e-07 59.3 64 48.4
Duzib132G1209 Durio zibethinus HOM05D002207 ORTHO05D002250 2.3e-07 59.3 64 48.4
Migut.B00378 Erythranthe guttata HOM05D002207 ORTHO05D002250 2.3e-07 59.3 64 45.3
Thecc.02G106400 Theobroma cacao HOM05D002207 ORTHO05D002250 2.3e-07 59.3 64 48.4
TWI79G0816 Tripterygium wilfordii HOM05D002207 ORTHO05D002250 2.3e-07 59.3 64 50.0
Duzib052G0320 Durio zibethinus HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 46.9
Eucgr.E02953 Eucalyptus grandis HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 46.9
FAN24G0198 Fragaria x ananassa HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 48.4
Gohir.A13G043200 Gossypium hirsutum HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 48.4
Gohir.D13G041700 Gossypium hirsutum HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 48.4
Gorai.013G046600 Gossypium raimondii HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 48.4
SalBow6G4512 Salvia bowleyana HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 45.3
SGA_v2.0_scaffold32G13044 Striga asiatica HOM05D002207 ORTHO05D002250 3.0e-07 58.9 67 44.8
TAR376G1158 Trochodendron aralioides HOM05D002207 ORTHO05D002250 3.0e-07 58.9 64 45.3
BcaNung00622 Brassica carinata HOM05D002207 ORTHO05D002250 3.9e-07 58.5 64 46.9
A01p03370 Brassica napus HOM05D002207 ORTHO05D002250 3.9e-07 58.5 64 46.9
BraA01t00323Z Brassica rapa HOM05D002207 ORTHO05D002250 3.9e-07 58.5 64 46.9
Cpa.g.sc200.11 Carica papaya HOM05D002207 ORTHO05D002250 3.9e-07 58.5 107 36.4
Cfa004566 Carpinus fangiana HOM05D002207 ORTHO05D002250 3.9e-07 58.5 64 48.4
THA.LOC104807248 Tarenaya hassleriana HOM05D002207 ORTHO05D002250 3.9e-07 58.5 64 46.9
MSTRG.16719 Avicennia marina HOM05D002207 ORTHO05D002250 5.1e-07 58.2 64 46.9
Sed0016071 Sechium edule HOM05D002207 ORTHO05D002250 6.7e-07 57.8 92 39.1
TAR376G0083 Trochodendron aralioides HOM05D002207 ORTHO05D002250 6.7e-07 57.8 64 46.9
BcaNung00618 Brassica carinata HOM05D002207 ORTHO05D002250 1.1e-06 57.0 64 45.3
C01p03680 Brassica napus HOM05D002207 ORTHO05D002250 1.1e-06 57.0 64 45.3
BolC1t00360H Brassica oleracea HOM05D002207 ORTHO05D002250 1.1e-06 57.0 64 45.3
Cc02_g19150 Coffea canephora HOM05D002207 ORTHO05D002250 1.1e-06 57.0 64 48.4
Dinv15753 Davidia involucrata HOM05D002207 ORTHO05D002250 1.1e-06 57.0 64 46.9
AL7G15960 Arabidopsis lyrata HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 45.3
AT4G35220 Arabidopsis thaliana HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 45.3
Carub.0007s0509 Capsella rubella HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 45.3
CARHR243520 Cardamine hirsuta HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 45.3
Cfa004567 Carpinus fangiana HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 46.9
DCAR_021996 Daucus carota HOM05D002207 ORTHO05D002250 1.5e-06 56.6 68 41.2
Thhalv10025961m.g Eutrema salsugineum HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 45.3
Lj5A213G82 Lonicera japonica HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 46.9
Nitab4.5_0002815g0120 Nicotiana tabacum HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 46.9
Nitab4.5_0005392g0100 Nicotiana tabacum HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 46.9
Peaxi162Scf00016g02254 Petunia axillaris HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 48.4
Prupe.8G133400 Prunus persica HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 45.3
Sp7g32990 Schrenkiella parvula HOM05D002207 ORTHO05D002250 1.5e-06 56.6 64 45.3
CSS0029359 Camellia sinensis var. sinensis HOM05D002207 ORTHO05D002250 1.9e-06 56.2 64 45.3
CDE04G0906 Ceratophyllum demersum HOM05D001905 ORTHO05D001820 1.9e-06 56.2 64 46.9
MELO3C018478.2 Cucumis melo HOM05D002207 ORTHO05D002250 1.9e-06 56.2 64 46.9
Eucgr.E02952 Eucalyptus grandis HOM05D002207 ORTHO05D002250 1.9e-06 56.2 64 45.3
QL11p034099 Quercus lobata HOM05D002207 ORTHO05D002250 1.9e-06 56.2 64 45.3
Sed0024993 Sechium edule HOM05D002207 ORTHO05D002250 1.9e-06 56.2 64 45.3
AUR62013255 Chenopodium quinoa HOM05D002207 ORTHO05D002250 2.5e-06 55.8 64 45.3
AUR62044360 Chenopodium quinoa HOM05D002207 ORTHO05D002250 2.5e-06 55.8 64 45.3
Lj5g0004858 Lotus japonicus HOM05D002207 ORTHO05D002250 2.5e-06 55.8 64 46.9
QL11p034091 Quercus lobata HOM05D002207 ORTHO05D002250 2.5e-06 55.8 64 45.3
QL93p0189_0042 Quercus lobata HOM05D002207 ORTHO05D002250 2.5e-06 55.8 64 45.3
Aa31LG2G14730 Aethionema arabicum HOM05D002207 ORTHO05D002250 3.3e-06 55.5 64 45.3
CANSAT25G1013 Cannabis sativa HOM05D002207 ORTHO05D002250 3.3e-06 55.5 64 42.2
AUR62010275 Chenopodium quinoa HOM05D002207 ORTHO05D002250 3.3e-06 55.5 64 45.3
ClCG02G006240 Citrullus lanatus HOM05D002207 ORTHO05D002250 3.3e-06 55.5 64 45.3
RcHm_v2.0_Chr6g0255621 Rosa chinensis HOM05D002207 ORTHO05D002250 3.3e-06 55.5 92 37.0
Atru.chr5.2574 Acer truncatum HOM05D002207 ORTHO05D002250 4.3e-06 55.1 64 45.3
AUR62010276 Chenopodium quinoa HOM05D002207 ORTHO05D002250 4.3e-06 55.1 64 45.3
DCAR_001639 Daucus carota HOM05D002207 ORTHO05D002250 4.3e-06 55.1 64 43.8
PSO675G6309 Papaver somniferum HOM05D002207 ORTHO05D002250 4.3e-06 55.1 64 43.8
PGR042G1755 Punica granatum HOM05D002207 ORTHO05D002250 4.3e-06 55.1 92 37.0
PGR142G0973 Punica granatum HOM05D002207 ORTHO05D002250 4.3e-06 55.1 64 43.8
RcHm_v2.0_Chr6g0255631 Rosa chinensis HOM05D002207 ORTHO05D002250 4.3e-06 55.1 64 46.9
CAN.G1231.14 Capsicum annuum HOM05D002207 ORTHO05D002250 5.6e-06 54.7 64 46.9
Sed0021372 Sechium edule HOM05D002207 ORTHO05D002250 5.6e-06 54.7 92 35.9
ATR0827G110 Amborella trichopoda HOM05D002207 ORTHO05D002250 7.4e-06 54.3 64 42.2
HanXRQChr13g0412381 Helianthus annuus HOM05D002207 ORTHO05D002250 7.4e-06 54.3 64 45.3
Manes.10G077303 Manihot esculenta HOM05D002207 ORTHO05D002250 7.4e-06 54.3 64 45.3
SalBow6G2417 Salvia bowleyana HOM05D002207 ORTHO05D002250 7.4e-06 54.3 66 40.9
VMungo0720G2683 Vigna mungo HOM05D002207 ORTHO05D002250 7.4e-06 54.3 64 46.9
Actinidia00417 Actinidia chinensis HOM05D002207 ORTHO05D002250 9.6e-06 53.9 64 43.8
ECA240G2774 Erigeron canadensis HOM05D002207 ORTHO05D002250 9.6e-06 53.9 64 45.3
Medtr1g107510 Medicago truncatula HOM05D002207 ORTHO05D002250 9.6e-06 53.9 64 45.3
SEGI_20666 Sequoiadendron giganteum HOM05D002207 ORTHO05D002250 9.6e-06 53.9 64 42.2


User provided reference genes

Program Settings