Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 2.1e-71 272.3 144 100.0
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 1.7e-60 236.1 144 84.7
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 3.7e-60 235.0 144 84.7
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 1.2e-50 203.4 145 77.2
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 1.6e-47 193.0 144 72.9
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 2.8e-47 192.2 144 71.5
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 3.6e-47 191.8 142 72.5
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 2.3e-46 189.1 144 71.5
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 1.4e-43 179.9 144 65.3
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 2.4e-43 179.1 144 69.4
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 2.1e-42 176.0 143 65.7
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 8.6e-41 170.6 143 63.6
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 2.5e-40 169.1 149 63.8
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 7.3e-40 167.5 142 62.0
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 1.6e-39 166.4 142 66.2
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 6.2e-39 164.5 144 65.3
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 1.8e-38 162.9 145 62.1
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 6.8e-38 161.0 144 60.4
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 6.8e-38 161.0 144 60.4
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 8.9e-38 160.6 145 64.1
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 1.2e-37 160.2 147 61.9
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 2.0e-37 159.5 131 64.9
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 2.0e-37 159.5 145 63.4
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 2.6e-37 159.1 115 70.4
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 4.4e-37 158.3 145 63.4
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 7.5e-37 157.5 144 60.4
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 9.9e-37 157.1 144 61.1
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 1.7e-36 156.4 146 62.3
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 2.2e-36 156.0 147 59.9
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 1.1e-35 153.7 144 59.0
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 1.4e-35 153.3 144 58.3
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 1.4e-35 153.3 142 59.2
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 1.9e-35 152.9 144 62.5
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 2.4e-35 152.5 144 58.3
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 4.1e-35 151.8 137 61.3
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 4.1e-35 151.8 144 59.7
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 4.1e-35 151.8 142 61.3
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 5.4e-35 151.4 142 59.2
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 7.1e-35 151.0 144 61.1
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 1.2e-34 150.2 145 58.6
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 2.7e-34 149.1 142 61.3
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 2.7e-34 149.1 142 57.0
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 4.6e-34 148.3 145 58.6
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 6.0e-34 147.9 144 59.0
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 7.8e-34 147.5 135 60.0
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 1.3e-33 146.7 116 69.0
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 2.3e-33 146.0 147 60.5
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 2.3e-33 146.0 144 59.0
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 3.0e-33 145.6 146 59.6
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 5.1e-33 144.8 147 57.8
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 6.6e-33 144.4 138 59.4
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 8.6e-33 144.1 145 58.6
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 8.6e-33 144.1 128 60.9
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 8.6e-33 144.1 144 57.6
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 8.6e-33 144.1 145 58.6
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 1.1e-32 143.7 145 59.3
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 1.9e-32 142.9 146 56.2
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 3.3e-32 142.1 144 57.6
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 4.3e-32 141.7 142 58.5
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 7.3e-32 141.0 86 82.6
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 7.3e-32 141.0 145 57.9
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 2.1e-31 139.4 104 71.2
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 8.1e-31 137.5 135 57.8
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 8.1e-31 137.5 121 62.0
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 1.4e-30 136.7 133 59.4
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 1.8e-30 136.3 145 57.9
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 2.4e-30 136.0 88 76.1
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 4.0e-30 135.2 138 58.0
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 4.0e-30 135.2 140 56.4
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 8.9e-30 134.0 103 67.0
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 2.6e-29 132.5 98 75.5
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 3.4e-29 132.1 154 53.9
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 4.4e-29 131.7 151 55.6
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 5.8e-29 131.3 145 55.2
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.3e-28 130.2 131 57.3
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 1.3e-28 130.2 133 54.1
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.7e-28 129.8 144 54.2
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 1.7e-28 129.8 145 55.2
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 2.2e-28 129.4 151 53.0
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 2.9e-28 129.0 150 52.7
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 3.8e-28 128.6 158 53.8
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 3.8e-28 128.6 148 52.0
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 3.8e-28 128.6 148 52.0
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 3.8e-28 128.6 131 56.5
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 6.4e-28 127.9 148 52.0
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 6.4e-28 127.9 148 52.0
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 8.4e-28 127.5 111 61.3
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 1.9e-27 126.3 154 51.9
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 2.4e-27 125.9 151 51.7
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 2.4e-27 125.9 154 52.6
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 3.2e-27 125.6 133 55.6
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 7.1e-27 124.4 92 69.6
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 9.2e-27 124.0 135 53.3
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 9.2e-27 124.0 79 75.9
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 1.2e-26 123.6 153 49.0
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 2.7e-26 122.5 131 55.7
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 7.8e-26 120.9 135 51.9
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 1.0e-25 120.6 107 61.7
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 1.3e-25 120.2 141 49.6
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 1.3e-25 120.2 105 61.9
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 7.3e-24 114.4 116 53.4
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 2.8e-23 112.5 110 50.0
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 4.7e-23 111.7 95 60.0
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 8.1e-23 110.9 78 75.6
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 2.4e-19 99.4 94 54.3
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 3.2e-19 99.0 113 48.7
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 1.3e-15 87.0 95 46.3
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 2.8e-15 85.9 102 46.1
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 8.1e-15 84.3 110 49.1
TAR628G1275 Trochodendron aralioides HOM05D000049 ORTHO05D008785 8.1e-15 84.3 73 56.2
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 5.3e-14 81.6 55 76.4
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 6.9e-14 81.3 133 39.1
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 6.9e-14 81.3 83 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 1.4e-11 73.6 83 43.4
SalBow6G4602 Salvia bowleyana HOM05D010989 ORTHO05D013112 3.5e-10 68.9 117 44.4
COL.COLO4_15744 Corchorus olitorius HOM05D001416 ORTHO05D002549 7.4e-08 61.2 32 87.5
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 3.1e-06 55.8 52 53.8


User provided reference genes

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