Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 6.7e-159 563.9 276 100.0
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.5e-134 483.0 287 82.2
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.4e-126 455.3 270 81.1
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.7e-117 426.4 290 72.4
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.8e-116 422.9 285 72.6
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 2.0e-115 419.5 291 69.8
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 7.8e-115 417.5 291 70.1
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.3e-114 416.8 291 70.8
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.3e-114 416.0 286 70.6
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.8e-114 415.2 291 70.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 6.6e-114 414.5 285 71.2
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 6.6e-114 414.5 286 70.3
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.1e-113 413.7 286 71.3
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.1e-113 413.7 286 71.3
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.1e-113 413.7 290 70.0
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.2e-112 410.2 291 69.4
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.1e-112 409.5 293 71.0
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.7e-112 408.3 286 70.6
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.0e-111 405.6 291 68.7
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.0e-111 405.2 272 71.7
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 5.2e-111 404.8 291 69.1
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 6.8e-111 404.4 284 71.1
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 6.8e-111 404.4 290 67.6
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 8.9e-111 404.1 273 74.7
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-110 403.3 291 68.0
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.5e-110 403.3 283 70.7
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.5e-110 403.3 291 69.1
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-110 402.9 291 68.7
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-110 402.9 291 68.7
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 4.4e-110 401.7 328 63.1
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 5.8e-110 401.4 291 68.0
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 9.8e-110 400.6 292 68.8
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.7e-109 399.8 290 68.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 2.2e-109 399.4 285 69.5
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.2e-109 399.4 284 70.1
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.7e-109 398.7 283 69.3
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 6.4e-109 397.9 285 69.1
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.4e-108 396.7 290 69.0
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.4e-108 396.7 293 67.6
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.4e-108 396.7 285 68.8
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.8e-108 396.4 285 67.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.8e-108 396.4 284 69.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.8e-108 396.4 283 70.3
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.2e-108 395.6 292 68.2
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 3.2e-108 395.6 283 69.3
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 7.0e-108 394.4 283 68.2
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.6e-107 393.3 321 62.6
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.7e-107 392.5 285 68.4
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.6e-107 391.7 291 66.7
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 4.6e-107 391.7 290 67.6
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 4.6e-107 391.7 295 66.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.6e-107 391.7 292 65.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.6e-107 391.7 292 67.1
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.0e-106 390.6 283 69.3
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.3e-106 390.2 291 66.3
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.3e-106 390.2 283 67.5
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.7e-106 389.8 285 67.0
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 5.0e-106 388.3 284 65.5
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 5.0e-106 388.3 285 66.3
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 4.3e-105 385.2 291 67.4
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 4.3e-105 385.2 285 66.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 5.6e-105 384.8 291 66.3
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 9.5e-105 384.0 286 67.1
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.6e-104 383.3 284 65.5
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 4.7e-104 381.7 275 70.9
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 6.2e-104 381.3 286 64.7
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.1e-103 380.6 277 69.3
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.4e-103 380.2 288 66.3
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.4e-103 380.2 291 64.9
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.3e-103 379.4 295 64.1
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 3.1e-103 379.0 289 63.7
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 6.8e-103 377.9 284 64.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 6.8e-103 377.9 284 65.1
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 6.8e-103 377.9 288 66.7
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.2e-102 377.1 284 64.1
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 2.0e-102 376.3 285 66.3
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 2.6e-102 375.9 285 64.6
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.6e-102 375.9 286 63.6
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.6e-102 375.9 285 64.9
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 9.8e-102 374.0 284 65.5
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.3e-101 373.6 284 63.7
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.7e-101 373.2 288 66.0
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 2.9e-101 372.5 289 61.6
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.7e-101 372.1 285 64.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 3.7e-101 372.1 285 61.1
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.9e-101 371.7 283 64.3
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 6.4e-101 371.3 285 64.6
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 6.4e-101 371.3 286 64.7
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 8.3e-101 370.9 285 64.6
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.1e-100 370.5 292 65.1
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.9e-100 369.8 286 65.7
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.9e-100 369.8 284 64.8
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 3.2e-100 369.0 284 64.8
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.2e-100 369.0 254 72.8
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 3.2e-100 369.0 285 63.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.1e-97 360.5 254 69.7
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.9e-97 359.8 239 72.4
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.5e-97 359.4 300 61.3
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 2.1e-96 356.3 283 63.3
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.2e-94 350.5 253 69.2
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.0e-94 349.7 323 57.9
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.0e-94 349.7 323 57.9
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.4e-92 341.7 290 61.4
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 5.4e-92 341.7 254 68.5
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 7.1e-92 341.3 253 66.8
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 4.6e-91 338.6 289 58.8
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.3e-90 337.0 278 60.1
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.7e-90 336.7 271 61.6
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 5.1e-90 335.1 254 63.8
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.7e-88 328.6 277 58.5
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.6e-83 312.0 232 66.4
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.5e-78 297.0 241 61.0
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 2.6e-78 296.2 280 53.9
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.4e-78 295.4 208 69.7
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 5.8e-78 295.0 258 57.4
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 9.3e-76 287.7 279 53.8
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 6.2e-72 275.0 284 49.6
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 9.0e-71 271.2 278 50.0
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.2e-69 266.5 191 66.5
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.1e-66 255.4 212 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.3e-64 250.8 237 54.9
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-57 227.3 282 48.6
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 7.4e-57 224.9 169 63.9
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 3.3e-49 199.5 130 70.8
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.3e-42 176.8 136 64.0
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 4.8e-40 169.1 152 57.2
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 5.9e-38 162.2 155 54.8
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.7e-37 160.6 152 55.3
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.9e-36 157.1 262 38.5
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 3.0e-34 149.8 140 56.4
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.7e-32 144.1 113 60.2
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.4e-31 140.2 272 33.1
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 3.6e-27 126.3 155 42.6
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.4e-26 124.4 100 60.0
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 8.8e-26 121.7 82 72.0
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.3e-25 119.8 67 86.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 9.1e-23 111.7 75 69.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.0e-21 105.9 266 29.3
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 4.2e-20 102.8 66 66.7
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.8e-18 97.4 365 25.8
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-17 94.7 60 78.3
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-17 94.4 74 62.2
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 6.3e-16 89.0 109 47.7
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.4e-15 87.0 84 53.6
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 5.3e-15 85.9 94 48.9
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.1e-15 85.1 64 64.1
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.6e-14 84.3 56 75.0
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.5e-14 82.8 88 50.0
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.5e-14 82.8 88 50.0
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 5.9e-14 82.4 92 47.8
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 3.8e-13 79.7 165 32.7
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 3.2e-12 76.6 122 41.8
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 8.8e-10 68.6 69 53.6
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.6e-09 67.0 47 74.5
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.1e-07 61.6 186 26.3
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 2.7e-06 57.0 46 65.2
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 5.9e-06 55.8 45 64.4
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.7e-06 55.5 39 64.1


User provided reference genes

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