Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22198 Beta vulgaris HOM05D003357 ORTHO05D003779 1.6e-122 443.4 327 100.0
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 7.9e-50 201.8 197 65.5
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 5.1e-49 199.1 175 61.7
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 5.1e-49 199.1 176 60.8
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.1e-48 198.0 175 60.6
AUR62027010 Chenopodium quinoa HOM05D003357 ORTHO05D003779 2.5e-48 196.8 163 96.9
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 2.5e-48 196.8 163 96.9
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 3.3e-48 196.4 173 61.3
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 1.3e-47 194.5 176 59.1
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 2.2e-47 193.7 173 59.5
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 2.2e-47 193.7 174 60.9
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 2.8e-47 193.4 172 61.0
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 2.8e-47 193.4 173 60.1
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 3.7e-47 193.0 167 59.9
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 3.7e-47 193.0 167 59.9
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 3.7e-47 193.0 165 60.6
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 3.7e-47 193.0 165 60.6
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 3.7e-47 193.0 166 59.0
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 8.2e-47 191.8 176 58.5
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 1.4e-46 191.0 181 56.9
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 1.4e-46 191.0 173 60.1
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.8e-46 190.7 165 62.4
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 1.8e-46 190.7 165 61.2
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 2.4e-46 190.3 187 59.9
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 2.4e-46 190.3 165 59.4
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 3.1e-46 189.9 165 60.0
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 3.1e-46 189.9 169 59.8
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 4.1e-46 189.5 166 60.2
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 6.9e-46 188.7 174 58.6
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.2e-45 188.0 176 58.5
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 1.2e-45 188.0 165 58.8
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.5e-45 187.6 172 58.7
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.5e-45 187.6 185 60.5
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 2.0e-45 187.2 177 57.6
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 2.0e-45 187.2 162 60.5
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 2.6e-45 186.8 167 58.1
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 4.5e-45 186.0 162 58.6
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 4.5e-45 186.0 176 58.0
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 4.5e-45 186.0 176 58.0
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 5.9e-45 185.7 174 58.0
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 7.7e-45 185.3 164 59.8
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 7.7e-45 185.3 166 57.8
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 7.7e-45 185.3 166 57.8
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.0e-44 184.9 176 57.4
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 1.3e-44 184.5 166 57.8
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 1.3e-44 184.5 176 56.8
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 1.3e-44 184.5 166 57.8
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 1.7e-44 184.1 165 57.0
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 2.2e-44 183.7 166 59.6
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 2.9e-44 183.3 166 57.8
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 3.8e-44 183.0 173 55.5
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 3.8e-44 183.0 178 56.2
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 3.8e-44 183.0 166 57.2
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 3.8e-44 183.0 166 57.2
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 6.5e-44 182.2 167 58.1
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 8.5e-44 181.8 166 58.4
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 8.5e-44 181.8 167 56.9
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 1.1e-43 181.4 178 55.6
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 1.9e-43 180.6 174 55.7
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 1.9e-43 180.6 194 58.8
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 2.5e-43 180.3 165 58.2
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.5e-43 180.3 165 58.2
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 3.2e-43 179.9 170 55.3
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 5.5e-43 179.1 165 57.0
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 7.2e-43 178.7 166 57.8
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 9.4e-43 178.3 165 58.8
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 9.4e-43 178.3 165 58.8
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 9.4e-43 178.3 164 57.9
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 1.2e-42 177.9 176 54.5
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 1.6e-42 177.6 181 54.1
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.6e-42 177.6 173 54.9
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 3.6e-42 176.4 171 55.6
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 4.7e-42 176.0 165 55.2
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 1.4e-41 174.5 186 60.2
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 1.4e-41 174.5 190 58.4
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 1.4e-41 174.5 162 54.9
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 1.4e-41 174.5 170 54.7
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 1.8e-41 174.1 169 56.8
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 2.3e-41 173.7 166 55.4
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 3.0e-41 173.3 165 53.3
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 6.7e-41 172.2 174 54.6
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.1e-40 171.4 180 52.2
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 3.3e-40 169.9 181 52.5
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 3.3e-40 169.9 190 57.9
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 4.4e-40 169.5 185 55.7
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 5.7e-40 169.1 170 54.7
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 5.7e-40 169.1 170 54.7
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 5.7e-40 169.1 170 54.7
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 5.7e-40 169.1 170 54.7
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 1.3e-39 167.9 172 52.9
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 2.2e-39 167.2 169 53.8
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 2.2e-39 167.2 169 53.8
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 2.2e-39 167.2 169 53.8
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 2.2e-39 167.2 169 53.8
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 4.8e-39 166.0 165 52.1
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 6.3e-39 165.6 170 50.6
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 1.1e-38 164.9 171 50.9
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 1.8e-38 164.1 178 50.0
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 5.3e-38 162.5 148 58.8
Aa31LG2G8800 Aethionema arabicum HOM05D003357 ORTHO05D003779 9.1e-38 161.8 172 52.3
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 4.5e-37 159.5 163 50.3
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 5.9e-37 159.1 167 50.3
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 7.7e-37 158.7 191 47.1
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 7.7e-37 158.7 176 48.9
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 7.7e-37 158.7 144 58.3
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 1.3e-36 157.9 165 50.3
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 2.2e-36 157.1 188 48.9
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 2.2e-36 157.1 185 48.6
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 3.8e-36 156.4 180 48.3
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 5.0e-36 156.0 186 50.5
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 6.5e-36 155.6 165 50.9
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 1.5e-35 154.5 169 48.5
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 3.6e-34 149.8 149 56.4
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 3.6e-34 149.8 149 56.4
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 6.1e-34 149.1 174 47.1
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 6.7e-33 145.6 140 57.9
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 8.8e-33 145.2 145 55.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.1e-32 144.8 152 53.3
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 4.4e-32 142.9 159 57.2
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 6.3e-31 139.0 141 55.3
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 1.1e-30 138.3 153 51.6
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 1.1e-30 138.3 153 52.9
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 1.4e-30 137.9 141 53.2
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.8e-30 137.5 175 44.6
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 7.0e-30 135.6 141 53.9
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 9.1e-30 135.2 140 52.9
Glyma.08G077900 Glycine max HOM05D003357 ORTHO05D003779 1.2e-29 134.8 167 44.9
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 3.5e-29 133.3 152 48.0
unitig_26.g9557 Utricularia gibba HOM05D003357 ORTHO05D003779 2.2e-28 130.6 146 47.9
ECA236G2437 Erigeron canadensis HOM05D003357 ORTHO05D003779 6.5e-28 129.0 165 43.6
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 1.5e-27 127.9 154 48.7
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 2.5e-27 127.1 169 40.2
ECA234G2199 Erigeron canadensis HOM05D003357 ORTHO05D003779 5.5e-27 125.9 125 53.6
HPP92_027206 Vanilla planifolia HOM05D003357 ORTHO05D003779 7.2e-27 125.6 168 42.3
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 9.4e-27 125.2 154 46.8
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 4.7e-26 122.9 153 47.1
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 4.7e-26 122.9 151 47.7
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 4.7e-26 122.9 156 46.2
Lj6g0024689 Lotus japonicus HOM05D003357 ORTHO05D003779 1.4e-25 121.3 151 46.4
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 1.4e-25 121.3 181 48.1
HanXRQChr03g0066581 Helianthus annuus HOM05D003357 ORTHO05D003779 1.8e-25 120.9 125 52.8
GSVIVG01029690001 Vitis vinifera HOM05D003357 ORTHO05D003779 2.6e-24 117.1 69 78.3
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 5.7e-24 115.9 151 47.0
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 1.3e-23 114.8 168 41.1
arahy.Tifrunner.gnm1.ann1.GBW8AP Arachis hypogaea HOM05D003357 ORTHO05D003779 1.7e-23 114.4 161 46.0
CSS0006159 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.7e-23 114.4 69 78.3
Cc02_g22170 Coffea canephora HOM05D003357 ORTHO05D003779 3.7e-23 113.2 69 76.8
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 1.4e-22 111.3 141 44.0
Rhsim11G0132500 Rhododendron simsii HOM05D003357 ORTHO05D003779 1.4e-17 94.7 101 52.5
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.3e-15 88.2 160 30.6
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 3.7e-15 86.7 125 43.2
Peaxi162Scf00018g00081 Petunia axillaris HOM05D003357 ORTHO05D003779 3.7e-15 86.7 98 48.0
HanXRQChr03g0066491 Helianthus annuus HOM05D003357 ORTHO05D003779 1.4e-14 84.7 122 40.2
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 3.5e-13 80.1 163 28.2
Manes.17G088150 Manihot esculenta HOM05D003357 ORTHO05D003779 1.7e-12 77.8 122 40.2
HanXRQChr03g0073191 Helianthus annuus HOM05D003357 ORTHO05D003779 2.5e-11 73.9 60 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3124 Anthoceros agrestis HOM05D003357 ORTHO05D003779 2.8e-10 70.5 162 28.4
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 1.5e-08 64.7 146 28.1
ECA240G3987 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.4e-08 63.2 43 72.1
Nn1g08556 Nelumbo nucifera HOM05D003357 ORTHO05D003779 3.7e-07 60.1 63 52.4
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.8e-06 57.8 157 26.1
arahy.Tifrunner.gnm1.ann1.PAK5F5 Arachis hypogaea HOM05D003988 ORTHO05D014448 3.2e-06 57.0 97 39.2


User provided reference genes

Program Settings