Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 3.1e-162 575.1 293 100.0
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 9.1e-114 414.1 267 74.5
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.9e-112 409.1 278 73.7
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 3.8e-112 408.7 287 70.4
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 8.5e-112 407.5 279 73.1
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.5e-111 406.8 259 76.4
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 2.5e-111 406.0 271 73.8
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 2.1e-110 402.9 252 78.2
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 2.7e-110 402.5 279 72.4
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.6e-110 402.1 259 76.1
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.4e-109 400.2 288 69.8
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 3.0e-109 399.1 272 72.8
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 8.8e-109 397.5 289 69.9
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 2.6e-108 396.0 272 72.8
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 4.4e-108 395.2 264 74.2
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 5.7e-108 394.8 287 68.3
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 9.7e-108 394.0 279 69.2
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 1.7e-107 393.3 271 72.7
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.2e-107 392.9 269 71.7
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.1e-106 390.6 263 73.0
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.1e-106 390.6 289 68.9
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 1.4e-106 390.2 260 72.3
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 1.4e-106 390.2 253 75.9
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 1.4e-106 390.2 278 70.1
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 2.0e-105 386.3 274 69.7
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 2.0e-105 386.3 278 69.8
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 2.7e-105 386.0 282 69.9
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 3.5e-105 385.6 264 70.8
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 1.0e-104 384.0 259 71.8
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 6.5e-104 381.3 278 68.3
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 8.5e-104 380.9 289 68.5
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 1.1e-103 380.6 259 71.4
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 1.5e-103 380.2 286 66.1
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 1.5e-103 380.2 248 75.0
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 1.9e-103 379.8 259 71.8
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 2.5e-103 379.4 279 67.0
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 9.4e-103 377.5 277 66.8
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 9.4e-103 377.5 277 66.8
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.6e-102 376.7 279 68.1
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 2.7e-102 375.9 218 87.6
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 3.6e-102 375.6 284 65.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.8e-101 373.2 285 67.0
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 2.3e-101 372.9 274 69.0
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 3.0e-101 372.5 283 65.7
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 4.0e-101 372.1 284 65.5
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 6.8e-101 371.3 317 60.9
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 2.0e-100 369.8 273 66.3
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 3.4e-100 369.0 272 66.9
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 4.4e-100 368.6 273 65.9
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 4.4e-100 368.6 289 67.1
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 4.4e-100 368.6 289 64.4
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 2.2e-99 366.3 277 65.3
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 4.8e-99 365.2 261 69.3
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 3.1e-98 362.5 285 64.9
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 4.1e-98 362.1 277 64.6
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 4.1e-98 362.1 267 67.0
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 7.0e-98 361.3 285 63.9
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 9.1e-98 360.9 257 69.6
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 3.5e-97 359.0 267 65.9
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 5.9e-97 358.2 229 75.5
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.0e-96 357.5 257 66.5
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.3e-96 357.1 256 71.1
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 2.3e-96 356.3 284 64.1
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 5.0e-96 355.1 206 87.9
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 8.6e-96 354.4 286 63.3
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 1.5e-95 353.6 286 63.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.5e-95 353.6 258 69.8
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.5e-95 353.6 228 74.1
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 2.5e-95 352.8 258 65.1
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 3.3e-95 352.4 268 64.6
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 5.5e-95 351.7 287 63.4
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 9.5e-95 350.9 287 63.8
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.2e-94 350.5 229 73.4
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 2.1e-94 349.7 228 74.6
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 8.0e-94 347.8 259 65.3
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 2.3e-93 346.3 248 67.7
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 3.0e-93 345.9 228 72.8
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 2.6e-92 342.8 228 72.4
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 3.4e-92 342.4 228 71.9
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 3.1e-90 335.9 229 69.9
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 5.4e-90 335.1 255 65.9
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 2.0e-89 333.2 263 60.5
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 1.0e-88 330.9 253 62.5
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 3.6e-86 322.4 255 63.5
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 3.1e-85 319.3 183 85.8
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 7.5e-84 314.7 230 68.7
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 6.4e-83 311.6 203 74.4
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 2.3e-80 303.1 215 68.4
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 1.8e-77 293.5 204 69.6
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 9.8e-76 287.7 202 70.3
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.4e-74 283.9 261 59.8
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 6.6e-72 275.0 196 70.9
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 1.9e-71 273.5 245 56.7
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 4.1e-66 255.8 263 49.0
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 4.1e-66 255.8 246 52.8
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.0e-64 251.1 218 61.9
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 2.5e-63 246.5 259 51.7
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 2.4e-61 240.0 245 49.4
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 5.2e-61 238.8 164 71.3
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.2e-60 237.7 188 64.9
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 4.4e-60 235.7 245 49.8
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.3e-51 207.6 274 44.5
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 5.1e-48 195.7 279 46.6
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 7.3e-47 191.8 134 70.1
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 6.5e-35 152.1 110 67.3
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 1.8e-32 144.1 172 44.8
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 2.6e-28 130.2 98 67.3
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.3e-27 127.9 98 63.3
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 5.1e-24 115.9 295 30.8
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 1.1e-21 108.2 335 27.8
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 7.7e-20 102.1 248 34.3
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.6e-17 93.2 102 53.9
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.8e-14 83.6 47 85.1
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 4.5e-12 76.3 253 25.7
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 5.0e-11 72.8 80 50.0
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 3.0e-08 63.5 57 52.6
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 5.1e-08 62.8 57 50.9
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 5.1e-08 62.8 57 50.9
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 8.8e-08 62.0 49 57.1
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 6.3e-06 55.8 34 67.6


User provided reference genes

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