Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.2e-23 112.5 63 100.0
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.2e-16 86.7 57 87.7
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.0e-14 82.8 57 78.9
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 8.7e-14 79.7 57 82.5
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-13 79.3 58 84.5
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 1.9e-13 78.6 62 77.4
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.3e-13 77.4 62 72.6
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 4.3e-13 77.4 62 74.2
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.3e-12 75.9 62 74.2
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 1.3e-12 75.9 62 74.2
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.6e-12 75.5 57 77.2
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.2e-12 75.1 62 72.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.2e-12 75.1 62 72.6
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 2.8e-12 74.7 62 72.6
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.8e-12 74.7 62 71.0
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 3.7e-12 74.3 62 71.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 4.8e-12 73.9 62 72.6
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.3e-12 73.6 62 72.6
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 8.2e-12 73.2 62 71.0
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.1e-11 72.8 57 75.4
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.1e-11 72.8 57 75.4
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.4e-11 72.4 57 75.4
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.4e-11 72.4 54 79.6
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.4e-11 72.4 62 71.0
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.4e-11 72.4 62 69.4
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.4e-11 72.4 57 75.4
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-11 72.4 62 72.6
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.4e-11 72.4 62 71.0
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.4e-11 72.4 57 75.4
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.8e-11 72.0 62 71.0
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.8e-11 72.0 57 73.7
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.4e-11 71.6 57 73.7
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 2.4e-11 71.6 57 73.7
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.1e-11 71.2 62 71.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.1e-11 71.2 57 73.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.1e-11 71.2 62 67.7
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.1e-11 70.9 62 71.0
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 4.1e-11 70.9 57 73.7
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.1e-11 70.9 57 73.7
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 4.1e-11 70.9 57 73.7
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 4.1e-11 70.9 57 73.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.3e-11 70.5 63 69.8
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.3e-11 70.5 63 69.8
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 6.9e-11 70.1 57 71.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.9e-11 70.1 62 67.7
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.9e-11 70.1 62 67.7
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 9.1e-11 69.7 57 73.7
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 9.1e-11 69.7 57 73.7
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.2e-10 69.3 62 69.4
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.2e-10 69.3 57 71.9
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.2e-10 69.3 62 67.7
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.2e-10 69.3 62 66.1
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.5e-10 68.9 60 70.0
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-10 68.9 62 64.5
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.0e-10 68.6 57 75.4
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.0e-10 68.6 62 66.1
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 2.6e-10 68.2 57 71.9
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 3.4e-10 67.8 62 67.7
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 4.5e-10 67.4 57 70.2
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 5.9e-10 67.0 57 70.2
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 7.7e-10 66.6 59 66.1
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 7.7e-10 66.6 57 71.9
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 7.7e-10 66.6 57 71.9
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 7.7e-10 66.6 62 62.9
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.7e-09 65.5 57 68.4
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.2e-09 65.1 54 72.2
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.2e-09 65.1 62 62.9
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 2.9e-09 64.7 62 62.9
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.9e-09 64.7 51 76.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.9e-09 64.7 62 64.5
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.8e-09 64.3 58 65.5
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.8e-09 64.3 62 64.5
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.8e-09 64.3 62 64.5
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 5.0e-09 63.9 58 72.4
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 6.5e-09 63.5 62 62.9
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 6.5e-09 63.5 57 68.4
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 6.5e-09 63.5 62 64.5
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 6.5e-09 63.5 62 64.5
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 8.5e-09 63.2 62 64.5
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 8.5e-09 63.2 62 64.5
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.4e-08 62.4 57 66.7
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.4e-08 62.4 62 61.3
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.4e-08 62.4 62 61.3
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.4e-08 62.4 54 70.4
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 3.2e-08 61.2 62 62.9
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 3.2e-08 61.2 62 62.9
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 3.2e-08 61.2 62 62.9
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 4.2e-08 60.8 62 61.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.5e-08 60.5 62 59.7
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 7.2e-08 60.1 54 64.8
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 7.2e-08 60.1 54 64.8
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 9.4e-08 59.7 62 59.7
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 9.4e-08 59.7 64 67.2
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.2e-07 59.3 62 59.7
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 7.9e-07 56.6 62 58.1
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.4e-06 55.8 57 61.4


User provided reference genes

Program Settings