Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 4.3e-116 421.4 221 100.0
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.3e-69 266.2 180 81.1
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 7.0e-66 254.6 180 81.1
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.6e-62 243.4 192 74.0
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.1e-46 189.9 182 60.4
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.4e-42 177.2 178 57.9
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.6e-41 173.7 184 58.7
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.9e-40 169.5 190 53.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.5e-39 167.2 166 59.6
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.3e-39 166.0 184 56.0
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 4.3e-39 165.6 193 54.9
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 7.3e-39 164.9 184 56.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 9.5e-39 164.5 194 55.7
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.6e-38 163.7 181 58.6
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.1e-38 163.3 178 54.5
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 4.7e-38 162.2 180 53.3
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 4.7e-38 162.2 193 53.9
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 6.1e-38 161.8 181 55.8
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 6.1e-38 161.8 194 55.2
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.4e-37 160.6 183 56.8
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.8e-37 160.2 177 55.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 3.0e-37 159.5 184 54.9
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.0e-37 159.5 181 54.7
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 6.8e-37 158.3 190 53.2
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 6.8e-37 158.3 183 55.7
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.2e-36 157.5 182 55.5
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-36 157.1 198 53.0
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.0e-36 156.8 188 52.7
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.6e-36 156.4 186 52.7
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 4.4e-36 155.6 182 53.3
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 4.4e-36 155.6 180 53.9
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.7e-36 155.2 180 55.0
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 5.7e-36 155.2 187 55.1
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.5e-36 154.8 181 55.2
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 7.5e-36 154.8 190 52.1
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 7.5e-36 154.8 189 55.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 9.8e-36 154.5 138 65.9
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 9.8e-36 154.5 183 54.6
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.7e-35 153.7 192 52.1
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.2e-35 153.3 191 54.5
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-35 153.3 182 52.7
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-35 153.3 182 52.7
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.2e-35 153.3 139 61.2
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.9e-35 152.9 198 52.0
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.7e-35 152.5 183 54.1
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 3.7e-35 152.5 192 51.6
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 6.4e-35 151.8 109 74.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.4e-35 151.8 183 55.2
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.1e-34 151.0 184 54.3
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.1e-34 151.0 187 55.1
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.8e-34 150.2 180 55.0
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.8e-34 150.2 186 51.1
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 3.2e-34 149.4 137 59.9
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.1e-34 149.1 179 52.0
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 4.1e-34 149.1 110 73.6
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 2.7e-33 146.4 114 70.2
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 2.7e-33 146.4 185 52.4
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.5e-33 146.0 187 51.3
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 4.6e-33 145.6 191 49.7
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 4.6e-33 145.6 213 46.9
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 5.9e-33 145.2 187 50.3
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 7.8e-33 144.8 187 51.3
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 7.8e-33 144.8 128 61.7
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.3e-32 144.1 195 48.2
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.3e-32 143.3 181 49.2
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 3.9e-32 142.5 190 50.5
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 5.0e-32 142.1 117 65.8
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 6.6e-32 141.7 187 49.7
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 8.6e-32 141.4 181 50.3
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 1.5e-31 140.6 112 67.0
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.5e-31 140.6 181 50.3
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 2.5e-31 139.8 108 68.5
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 4.3e-31 139.0 129 60.5
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 4.3e-31 139.0 110 67.3
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 5.6e-31 138.7 118 64.4
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 5.6e-31 138.7 181 48.6
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 9.5e-31 137.9 131 59.5
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.2e-30 137.5 181 49.2
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.2e-30 137.5 103 74.8
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.6e-30 137.1 121 62.0
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 2.1e-30 136.7 189 49.7
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.8e-30 136.3 176 47.7
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 4.7e-30 135.6 110 66.4
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 6.2e-30 135.2 182 52.2
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.0e-29 134.4 136 57.4
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.8e-29 133.7 188 48.4
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.8e-29 133.7 243 41.6
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.8e-29 133.7 109 66.1
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.8e-29 133.7 181 51.4
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 3.1e-29 132.9 137 56.2
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.0e-29 132.5 129 58.1
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 5.2e-29 132.1 186 50.0
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 6.8e-29 131.7 187 51.3
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.2e-28 131.0 129 56.6
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.2e-28 131.0 180 46.1
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.5e-28 130.6 116 64.7
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 3.4e-28 129.4 129 56.6
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 3.4e-28 129.4 113 65.5
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 4.4e-28 129.0 129 56.6
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 7.5e-28 128.3 128 57.0
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 9.8e-28 127.9 125 58.4
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 9.8e-28 127.9 125 58.4
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.3e-27 127.5 126 57.9
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 2.9e-27 126.3 130 55.4
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 4.9e-27 125.6 126 56.3
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.1e-26 124.4 103 69.9
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 3.2e-26 122.9 114 62.3
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 7.0e-26 121.7 180 46.1
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 7.0e-26 121.7 187 46.5
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 9.2e-26 121.3 113 62.8
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.2e-25 120.9 187 46.0
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.2e-25 120.9 187 46.0
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.2e-25 120.9 187 46.0
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 6.0e-25 118.6 104 62.5
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 3.0e-24 116.3 181 42.0
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.9e-23 113.6 103 61.2
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.9e-23 113.6 128 51.6
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 8.1e-22 108.2 122 54.9
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 2.6e-20 103.2 134 49.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.4e-20 102.8 155 47.7
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 6.4e-19 98.6 152 42.8
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.4e-18 97.4 179 42.5
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.2e-18 96.3 172 44.8
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.2e-17 94.4 175 40.6
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.6e-17 94.0 84 61.9
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.6e-17 94.0 142 44.4
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 4.6e-17 92.4 80 66.2
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 5.1e-16 89.0 144 43.1
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.5e-15 86.7 114 49.1
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 2.5e-15 86.7 112 52.7
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 3.3e-15 86.3 138 42.8
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 3.3e-15 86.3 91 56.0
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 4.7e-14 82.4 115 48.7
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 8.1e-14 81.6 104 50.0
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.1e-13 81.3 129 41.1
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.4e-13 80.9 98 54.1
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 2.3e-13 80.1 140 39.3
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 6.8e-13 78.6 53 69.8
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 4.4e-12 75.9 84 52.4
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 1.3e-11 74.3 116 44.8
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.6e-09 67.4 101 46.5
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 2.7e-09 66.6 74 47.3
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 5.1e-08 62.4 77 42.9
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 5.1e-08 62.4 48 68.8
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 5.6e-07 58.9 138 39.9


User provided reference genes

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