Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 2358.2 1277 100.0
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1904.8 1277 81.5
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1890.2 1277 81.2
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1751.1 1296 73.4
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1565.4 1234 67.7
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1546.6 1292 65.6
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1536.9 1286 64.5
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1530.0 1237 66.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1528.1 1284 65.1
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1525.4 1325 61.6
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1513.0 1230 65.0
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1511.5 1290 62.1
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1510.4 1232 65.3
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1313 62.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1500.3 1282 63.1
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1494.2 1363 61.8
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1494.2 1283 65.9
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1489.2 1318 62.8
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1488.8 1283 62.4
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1487.6 1221 64.4
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1481.8 1305 62.1
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1481.1 1253 64.2
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1479.9 1242 63.0
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1479.5 1181 65.0
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1473.0 1120 75.1
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1469.1 1235 64.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1468.8 1293 61.3
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1459.5 1285 61.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1458.7 1221 62.9
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1455.7 1242 62.2
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1451.4 1311 62.3
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1445.6 1240 63.0
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1445.3 1219 63.0
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1442.9 1295 62.2
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1439.1 1207 62.8
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1437.6 1302 61.3
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1437.6 1228 62.5
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1437.6 1291 60.5
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1436.0 1281 60.1
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1435.2 1066 71.4
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1432.5 1239 61.7
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1431.8 1291 61.5
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1431.0 1283 59.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1422.5 1202 62.7
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1421.0 1242 62.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1420.2 1312 60.4
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1418.3 1291 60.5
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1418.3 1206 61.8
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1417.1 1288 59.4
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1415.6 1213 61.8
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1415.2 1258 60.5
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1413.3 1279 59.4
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1412.5 1235 59.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1410.6 1215 61.6
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1409.0 1281 59.3
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1406.3 1279 59.1
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1405.6 1293 59.0
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1404.4 1293 59.0
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1402.1 1247 61.9
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1391.7 1285 60.3
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1391.7 1286 59.6
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1384.4 1302 60.0
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1381.7 1232 61.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1378.2 1357 57.7
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1377.5 1313 58.9
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1372.8 1275 58.3
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1372.5 1261 60.1
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1371.7 1238 60.9
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1370.5 1312 57.6
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1368.2 1254 60.0
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1362.4 1289 59.3
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1360.9 1288 59.5
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1352.0 1278 60.0
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1345.1 1214 60.8
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1342.4 1300 58.2
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1342.0 1326 57.5
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1341.6 1191 59.4
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1328.9 1191 61.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1328.5 1259 58.4
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1326.6 1241 60.2
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1324.3 1190 61.3
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1317.4 1259 57.3
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1313.9 1363 55.2
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1312.0 1321 56.9
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1310.4 1193 61.0
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1310.4 1193 61.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1309.3 1224 60.0
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1303.9 1228 58.6
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1300.8 1197 60.6
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1299.3 1313 56.3
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1268.1 1237 57.9
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1264.6 1308 53.9
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1248.8 1249 56.8
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1236.5 1279 54.1
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1214.5 1173 57.9
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1172.5 1237 52.4
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1166.4 1256 52.0
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1150.2 1226 54.0
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1137.1 1237 51.8
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1125.5 1227 51.8
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1109.4 1351 47.4
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1098.6 946 64.1
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1096.6 1217 51.4
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 8.7e-312 1074.7 1212 48.8
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 7.1e-296 1021.1 1253 47.6
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.3e-294 1016.1 1236 47.5
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 6.2e-292 1008.1 744 70.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 7.6e-290 1001.1 1222 48.0
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 7.0e-243 845.1 1293 41.9
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 6.7e-238 828.6 697 63.3
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 4.1e-219 766.1 1102 41.9
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 3.9e-169 600.1 542 63.3
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.5e-168 598.2 435 67.6
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.8e-159 566.6 1273 36.7
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.4e-155 555.1 814 45.6
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.1e-152 545.4 1235 34.3
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 6.3e-151 539.7 1212 32.1
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.5e-149 535.0 685 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.0e-148 532.3 1259 32.7
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.9e-147 528.1 449 63.9
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.7e-146 524.2 543 56.0
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 4.8e-135 486.9 608 46.9
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.2e-133 482.3 1310 31.7
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.6e-122 444.1 1208 29.9
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.3e-108 399.1 1044 31.6
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.1e-99 369.4 1285 27.2
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 9.8e-96 356.3 1040 30.3
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 5.6e-83 313.9 320 53.8
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.0e-76 291.6 240 63.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 8.1e-66 256.9 499 34.9
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 6.9e-65 253.8 481 35.3
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 5.6e-51 207.6 1211 25.1
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.5e-43 183.0 1233 25.6
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.2e-42 177.2 216 45.4
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 2.5e-27 129.0 154 49.4
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 4.3e-27 128.3 90 70.0
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.4e-25 122.5 129 50.4
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 5.0e-23 114.8 187 36.9
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.5e-23 114.4 347 27.7
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 2.6e-19 102.4 142 45.1
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.7e-18 98.6 122 44.3
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.0e-16 92.8 112 52.7
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.0e-15 90.5 71 59.2
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 8.5e-15 87.4 72 58.3
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.5e-14 86.7 61 68.9
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 2.5e-14 85.9 84 47.6
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-13 83.6 58 70.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-13 83.6 58 70.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.6e-13 83.2 79 55.7
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 8.0e-13 80.9 72 52.8
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 3.3e-11 75.5 97 46.4
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 7.4e-11 74.3 191 30.9
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.4e-09 70.1 39 84.6
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 1.8e-09 69.7 384 22.9
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 2.5e-06 59.3 97 39.2


User provided reference genes

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