Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.8e-265 918.7 457 100.0
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.2e-218 763.1 456 83.8
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 3.9e-212 741.5 458 80.8
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 5.1e-212 741.1 456 82.5
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 5.4e-198 694.5 457 76.6
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 3.5e-197 691.8 457 75.9
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.1e-195 686.8 457 75.3
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.1e-195 686.8 457 75.3
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.5e-195 686.4 457 74.6
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 7.4e-195 684.1 457 75.3
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 9.6e-195 683.7 458 74.9
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.6e-194 682.9 457 74.4
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.8e-194 681.4 457 74.2
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.0e-193 678.3 457 74.2
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.3e-193 677.9 457 74.2
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.9e-193 677.6 435 76.6
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 9.0e-193 677.2 458 74.5
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.2e-192 676.8 438 76.5
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.5e-192 676.4 458 73.8
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.0e-192 676.0 458 74.2
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 3.2e-190 668.7 448 75.2
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.6e-189 666.4 458 73.1
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.6e-189 666.4 438 76.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 4.6e-189 664.8 457 71.8
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 6.0e-189 664.5 457 72.6
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.8e-188 662.9 457 72.9
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 2.3e-188 662.5 458 73.6
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 5.1e-188 661.4 457 72.9
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 8.7e-188 660.6 457 72.2
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.1e-187 660.2 457 72.6
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.5e-187 659.8 461 71.6
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.5e-187 659.1 458 73.1
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 3.3e-187 658.7 458 73.4
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 5.6e-187 657.9 458 73.4
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 9.6e-187 657.1 456 71.5
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 9.6e-187 657.1 438 73.7
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.6e-186 656.4 459 73.0
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.6e-186 656.4 457 72.6
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.6e-186 656.4 458 72.5
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 2.8e-186 655.6 457 73.1
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 4.0e-185 651.7 450 74.7
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 6.9e-185 651.0 438 73.7
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 6.9e-185 651.0 438 73.5
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 6.9e-185 651.0 438 73.5
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 6.9e-185 651.0 434 74.0
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 9.0e-185 650.6 457 72.2
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 9.0e-185 650.6 443 72.5
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 9.0e-185 650.6 443 72.5
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.2e-184 650.2 431 74.2
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.5e-184 649.8 438 73.3
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 2.6e-184 649.0 457 72.4
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.8e-184 647.9 454 71.8
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 5.8e-184 647.9 438 73.1
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.8e-184 647.9 457 72.4
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.8e-184 647.9 457 72.6
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 5.8e-184 647.9 458 71.6
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 7.6e-184 647.5 438 73.1
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.0e-183 647.1 457 71.6
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.0e-183 647.1 447 71.8
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.2e-183 646.0 457 72.0
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 3.8e-183 645.2 424 75.0
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.8e-183 645.2 451 72.7
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 3.8e-183 645.2 436 74.1
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.1e-182 643.7 438 73.7
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.4e-182 643.3 459 70.4
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 2.5e-182 642.5 424 75.0
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 7.1e-182 641.0 459 69.9
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 7.1e-182 641.0 463 69.8
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 9.3e-182 640.6 463 71.7
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.6e-181 639.8 462 71.9
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 2.1e-181 639.4 459 70.4
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 2.1e-181 639.4 424 74.5
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.7e-181 639.0 362 88.4
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 4.6e-181 638.3 456 70.4
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 6.0e-181 637.9 454 70.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 1.0e-180 637.1 459 69.9
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.8e-180 636.3 434 74.7
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 2.3e-180 636.0 463 70.6
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 3.0e-180 635.6 459 69.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 3.0e-180 635.6 451 70.3
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.0e-180 635.6 449 70.8
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 5.1e-180 634.8 452 72.1
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.1e-179 633.6 444 72.5
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.6e-178 629.8 469 69.3
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.1e-178 629.4 465 69.2
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.8e-178 629.0 437 71.6
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 2.8e-178 629.0 470 68.1
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 4.8e-178 628.2 465 68.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 6.3e-178 627.9 469 69.1
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.3e-178 627.9 438 71.7
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 6.3e-178 627.9 480 69.0
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 8.2e-178 627.5 437 71.4
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.4e-177 626.7 458 67.7
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.2e-176 623.6 461 69.8
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 2.0e-176 622.9 439 72.2
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 5.9e-176 621.3 465 68.0
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.3e-175 620.2 453 71.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.1e-174 617.1 423 73.0
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-174 617.1 473 67.9
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.5e-174 615.9 422 73.5
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 2.1e-173 612.8 444 69.8
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.0e-172 610.5 458 69.0
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.3e-170 601.3 454 67.8
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.1e-165 584.7 460 66.5
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 7.9e-165 584.3 438 66.0
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.8e-164 583.2 424 67.9
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.8e-164 583.2 565 56.8
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.0e-164 582.4 441 66.7
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 3.9e-164 582.0 421 69.6
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.6e-163 579.3 421 69.6
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.3e-162 577.0 361 77.3
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.4e-161 573.5 470 63.2
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.8e-161 573.2 421 68.4
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.8e-161 573.2 451 63.9
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.5e-160 570.1 468 63.0
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.1e-158 563.9 467 63.0
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.6e-155 552.7 454 64.5
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.4e-148 530.4 439 61.3
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 4.0e-148 528.9 436 62.4
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 9.7e-147 524.2 353 73.7
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.3e-146 523.9 422 63.7
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.4e-145 520.4 457 61.5
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 9.1e-137 491.1 398 64.8
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.8e-135 485.7 455 53.8
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 4.2e-134 482.3 413 58.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.1e-133 479.9 430 56.3
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 6.8e-132 474.9 361 64.5
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 9.8e-131 471.1 420 58.3
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 6.3e-130 468.4 351 66.1
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.6e-128 463.8 390 60.3
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.2e-125 454.1 455 54.7
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 9.5e-118 427.9 304 70.7
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 9.8e-115 417.9 457 51.4
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.2e-104 384.4 292 64.0
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.3e-95 354.4 337 57.6
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.9e-84 315.5 209 78.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 6.9e-84 315.5 258 63.6
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 4.5e-83 312.8 212 75.5
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 3.9e-79 299.7 260 61.9
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 5.3e-76 289.3 425 42.6
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.5e-75 287.7 197 73.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.7e-64 250.4 181 72.9
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 4.7e-48 196.4 167 62.9
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 1.8e-44 184.5 139 68.3
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 5.7e-38 162.9 216 45.4
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.5e-33 148.3 150 51.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.4e-31 141.7 149 52.3
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 4.8e-21 106.7 61 85.2
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.3e-10 72.0 58 58.6
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 9.8e-06 55.8 88 40.9


User provided reference genes

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