Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 8.5e-154 547.0 278 100.0
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 4.4e-134 481.5 281 86.1
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 5.6e-129 464.5 252 89.7
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 4.9e-117 424.9 277 76.5
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 3.5e-115 418.7 278 74.5
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 7.8e-115 417.5 277 74.7
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 7.8e-115 417.5 285 72.6
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 1.3e-114 416.8 280 73.6
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.1e-113 413.7 238 83.6
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.9e-113 412.9 265 76.6
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 3.3e-113 412.1 265 76.2
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 4.3e-113 411.8 265 76.6
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 5.6e-113 411.4 277 73.6
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.6e-112 409.8 280 72.9
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.6e-112 409.8 280 72.9
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.6e-112 409.8 280 72.9
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.6e-112 409.8 246 81.7
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.6e-112 409.8 285 71.9
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 3.6e-112 408.7 279 74.2
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.4e-111 406.8 267 75.7
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.4e-111 406.8 267 75.7
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.8e-111 406.4 253 78.7
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 2.4e-111 406.0 246 79.7
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 2.4e-111 406.0 246 79.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 2.4e-111 406.0 275 75.6
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 2.4e-111 406.0 249 79.9
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 3.1e-111 405.6 267 76.4
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 4.0e-111 405.2 278 71.6
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 6.8e-111 404.4 276 72.5
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 8.9e-111 404.1 269 74.0
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.2e-110 403.7 278 71.9
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.2e-110 403.7 248 79.0
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.6e-110 402.5 274 73.0
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 3.4e-110 402.1 240 79.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 4.4e-110 401.7 279 73.5
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 4.4e-110 401.7 272 72.4
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 5.8e-110 401.4 238 79.8
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 5.8e-110 401.4 279 72.0
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 9.9e-110 400.6 274 74.5
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 9.9e-110 400.6 238 79.4
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 2.9e-109 399.1 270 73.3
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 2.9e-109 399.1 275 73.5
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.9e-109 399.1 242 79.8
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 6.4e-109 397.9 240 79.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 8.4e-109 397.5 270 73.0
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 8.4e-109 397.5 270 73.0
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.1e-108 397.1 270 73.7
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.1e-108 397.1 271 73.4
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 1.4e-108 396.7 255 74.9
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.4e-108 396.7 251 77.7
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.9e-108 396.4 270 72.6
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 3.2e-108 395.6 260 75.4
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 3.2e-108 395.6 252 77.4
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 7.1e-108 394.4 251 76.9
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 7.1e-108 394.4 284 70.4
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 7.1e-108 394.4 233 79.0
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 9.2e-108 394.0 280 69.6
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 1.2e-107 393.7 279 70.6
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.2e-107 393.7 280 71.1
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-107 393.7 245 78.0
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.6e-107 393.3 238 80.3
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.5e-107 392.1 273 72.2
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 3.5e-107 392.1 281 71.2
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 4.6e-107 391.7 253 76.7
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 4.6e-107 391.7 281 69.4
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 6.0e-107 391.3 240 77.9
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 7.8e-107 391.0 253 75.5
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.0e-106 390.6 281 70.1
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 2.3e-106 389.4 274 70.4
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 3.0e-106 389.0 273 72.2
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 3.0e-106 389.0 250 75.6
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 3.9e-106 388.7 245 75.9
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 6.6e-106 387.9 240 75.4
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 6.6e-106 387.9 253 76.7
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 6.6e-106 387.9 250 76.8
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.1e-105 387.1 282 71.3
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.5e-105 386.7 248 76.2
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.5e-105 386.7 256 73.0
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.5e-105 386.7 278 70.9
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 1.9e-105 386.3 234 78.2
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.5e-105 386.0 239 77.8
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.5e-105 386.0 267 72.3
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 3.3e-105 385.6 247 74.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 7.3e-105 384.4 240 77.5
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 9.6e-105 384.0 273 71.8
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.2e-104 383.6 252 75.8
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-104 383.3 238 76.5
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 3.6e-104 382.1 238 76.9
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 6.2e-104 381.3 260 72.3
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 2.4e-103 379.4 239 77.8
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 3.1e-103 379.0 223 79.8
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 3.1e-103 379.0 239 73.6
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 5.3e-103 378.3 236 77.1
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.0e-102 376.3 245 75.9
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.7e-101 373.2 270 69.3
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.7e-101 373.2 235 74.9
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 4.9e-101 371.7 239 76.2
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.1e-100 370.5 235 76.2
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.4e-100 369.4 284 66.9
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 9.3e-100 367.5 279 66.7
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 2.1e-99 366.3 266 67.3
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 5.1e-98 361.7 237 71.3
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 5.6e-97 358.2 223 74.9
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 1.6e-96 356.7 286 64.3
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 6.2e-96 354.8 272 68.4
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.4e-95 353.6 220 76.4
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 1.5e-94 350.1 269 67.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 3.4e-94 349.0 259 67.2
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.1e-92 344.0 400 49.5
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 3.2e-92 342.4 225 73.3
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.0e-87 324.3 243 66.3
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.5e-86 323.6 243 64.6
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 7.6e-86 321.2 246 66.3
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 4.6e-83 312.0 235 64.7
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.8e-82 310.1 239 63.6
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 9.0e-79 297.7 189 77.2
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.0e-77 294.3 176 80.1
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 7.1e-76 288.1 238 58.8
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 5.7e-73 278.5 240 61.2
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 3.1e-71 272.7 279 53.4
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 2.9e-69 266.2 190 68.9
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 6.5e-69 265.0 224 60.7
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 8.5e-69 264.6 175 71.4
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.8e-66 256.9 232 57.8
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 3.1e-63 246.1 236 54.2
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 7.2e-60 235.0 255 52.2
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.2e-59 234.2 167 73.7
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.1e-57 227.6 171 64.3
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.8e-55 220.3 135 78.5
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-52 211.1 237 48.5
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 6.3e-48 195.3 224 42.4
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.1e-47 194.5 113 79.6
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.0e-46 190.3 221 45.7
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.1e-44 184.5 124 71.8
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.5e-44 184.1 221 42.5
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.2e-41 174.5 125 68.8
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 9.4e-36 154.8 115 68.7
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 8.8e-34 148.3 87 77.0
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.2e-32 143.7 87 75.9
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 3.1e-31 139.8 140 56.4
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.3e-29 133.7 72 81.9
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 3.7e-24 116.3 109 61.5
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 9.2e-23 111.7 255 29.4
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 4.5e-22 109.4 64 78.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 5.9e-22 109.0 79 65.8
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.1e-15 86.3 86 54.7
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.3e-13 80.5 128 43.8
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.5e-12 77.8 45 77.8
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.2e-09 68.2 213 28.6
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-09 68.2 69 53.6
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 3.4e-09 66.6 243 26.7
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 4.9e-08 62.8 67 53.7
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 4.9e-08 62.8 202 31.2
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 6.4e-08 62.4 215 29.8
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 8.3e-08 62.0 209 27.8
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 1.9e-07 60.8 199 28.1
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 4.1e-07 59.7 246 25.6
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 9.2e-07 58.5 241 24.1
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 9.2e-07 58.5 241 24.1
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 9.2e-07 58.5 177 28.2
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 2.7e-06 57.0 231 26.8
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 2.7e-06 57.0 229 25.3
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 3.5e-06 56.6 28 89.3
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 3.5e-06 56.6 244 23.8
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 3.5e-06 56.6 204 29.9
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 3.5e-06 56.6 161 30.4
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 4.6e-06 56.2 206 28.2
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 6.0e-06 55.8 233 25.3
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 7.8e-06 55.5 35 71.4


User provided reference genes

Program Settings