Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 3.7e-85 318.2 160 100.0
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 2.3e-74 282.3 160 85.6
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 4.7e-72 274.6 184 77.2
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 6.1e-72 274.2 163 85.9
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 8.9e-71 270.4 155 85.2
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 3.4e-70 268.5 160 81.9
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 9.8e-70 266.9 157 83.4
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 9.8e-70 266.9 160 81.9
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.3e-69 266.5 161 81.4
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 1.7e-69 266.2 160 80.0
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 2.9e-69 265.4 160 80.6
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 3.7e-69 265.0 157 82.2
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 6.4e-69 264.2 157 82.8
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 8.3e-69 263.8 157 79.6
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 8.3e-69 263.8 160 80.6
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 8.3e-69 263.8 160 81.9
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.1e-68 263.5 154 82.5
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 1.4e-68 263.1 157 80.3
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.4e-68 263.1 157 80.3
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.9e-68 262.7 156 80.1
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 1.9e-68 262.7 155 81.3
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 2.4e-68 262.3 160 78.8
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.2e-68 261.9 155 81.3
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.2e-68 261.9 155 81.3
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.2e-68 261.9 157 82.2
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.2e-68 261.9 157 82.2
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 4.1e-68 261.5 155 81.3
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 4.1e-68 261.5 160 80.0
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.4e-68 261.2 157 82.8
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 7.0e-68 260.8 155 80.0
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 9.2e-68 260.4 157 81.5
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 9.2e-68 260.4 157 82.8
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.2e-67 260.0 157 82.8
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.2e-67 260.0 155 80.6
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.6e-67 259.6 155 79.4
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.6e-67 259.6 155 82.6
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.6e-67 259.6 155 81.3
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.7e-67 258.8 152 84.2
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 2.7e-67 258.8 160 80.0
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 2.7e-67 258.8 160 80.0
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.6e-67 258.1 156 78.8
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 7.8e-67 257.3 165 77.6
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 7.8e-67 257.3 160 78.8
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.3e-66 256.5 155 81.3
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.7e-66 256.1 160 79.4
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 3.0e-66 255.4 152 83.6
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 3.0e-66 255.4 155 81.9
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 3.9e-66 255.0 160 78.8
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 8.6e-66 253.8 155 80.0
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 8.6e-66 253.8 156 78.8
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 8.6e-66 253.8 152 81.6
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 1.5e-65 253.1 160 75.6
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.5e-65 253.1 153 81.0
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.5e-65 253.1 155 79.4
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.9e-65 252.7 157 77.7
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.6e-65 251.1 141 86.5
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 7.3e-65 250.8 141 87.2
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 7.3e-65 250.8 157 77.1
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.6e-64 249.6 153 79.1
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.6e-64 249.6 158 77.2
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.6e-64 249.6 160 73.1
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 2.1e-64 249.2 155 79.4
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 2.8e-64 248.8 158 79.1
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.8e-64 248.8 153 77.8
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 2.8e-64 248.8 153 79.1
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 3.6e-64 248.4 153 77.8
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 4.7e-64 248.1 155 77.4
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 6.2e-64 247.7 153 79.7
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 6.2e-64 247.7 153 77.8
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 8.0e-64 247.3 161 77.0
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 8.0e-64 247.3 141 86.5
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.1e-63 246.9 157 75.8
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.4e-63 246.5 160 75.6
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.8e-63 246.1 158 77.2
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 3.1e-63 245.4 156 78.2
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.1e-63 245.4 141 85.1
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 3.1e-63 245.4 178 70.8
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 5.2e-63 244.6 165 73.9
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 8.9e-63 243.8 159 76.7
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.2e-62 243.4 155 76.8
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.2e-62 243.4 155 77.4
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.2e-62 243.4 157 76.4
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 1.2e-62 243.4 180 70.0
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 144 79.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 2.0e-62 242.7 153 75.8
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 4.4e-62 241.5 153 77.1
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 9.8e-62 240.4 160 74.4
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 1.7e-61 239.6 152 78.3
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 2.9e-61 238.8 156 73.1
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 3.7e-61 238.4 142 80.3
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 3.7e-61 238.4 155 76.1
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 1.4e-60 236.5 143 78.3
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 1.9e-60 236.1 158 73.4
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 4.1e-60 235.0 141 80.1
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 4.1e-60 235.0 151 74.2
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 9.2e-60 233.8 141 79.4
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.2e-59 233.4 160 75.6
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.1e-59 232.6 153 74.5
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.3e-58 229.9 156 73.7
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 6.6e-58 227.6 155 73.5
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 4.3e-57 224.9 158 70.9
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.8e-56 222.2 142 74.6
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.4e-55 219.9 143 73.4
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.4e-55 219.9 142 75.4
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 5.2e-55 218.0 141 74.5
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 5.2e-55 218.0 141 74.5
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 5.2e-55 218.0 141 74.5
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 5.2e-55 218.0 158 69.0
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 6.8e-55 217.6 158 69.6
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 6.8e-55 217.6 141 74.5
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.2e-54 216.9 141 73.8
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.3e-53 213.4 141 73.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.3e-53 213.4 141 73.0
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.7e-53 213.0 141 72.3
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.7e-53 213.0 141 72.3
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 2.2e-53 212.6 158 68.4
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.4e-52 209.9 162 64.2
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 6.0e-51 204.5 196 56.1
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.9e-50 201.8 132 74.2
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 1.4e-47 193.4 152 67.8
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.4e-47 193.4 157 61.8
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 2.2e-45 186.0 125 69.6
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.6e-43 179.9 109 79.8
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 5.6e-41 171.4 130 60.0
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 5.3e-39 164.9 104 76.0
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 9.0e-39 164.1 93 86.0
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 5.4e-36 154.8 93 80.6
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 4.6e-35 151.8 150 52.7
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 3.9e-34 148.7 151 49.7
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 2.8e-32 142.5 87 81.6
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 9.9e-30 134.0 98 70.4
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 3.5e-27 125.6 141 46.1
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 3.9e-26 122.1 78 75.6
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.3e-21 107.1 125 47.2
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 3.5e-19 99.0 125 44.0
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.0e-13 80.9 50 78.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 4.9e-13 78.6 48 75.0


User provided reference genes

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