Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 0.0e+00 1382.9 755 100.0
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.2e-297 1025.4 793 73.6
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 7.7e-274 947.2 777 67.8
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.8e-260 902.1 606 78.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.3e-225 786.2 789 56.9
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 8.1e-223 777.7 795 56.4
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.6e-221 772.7 788 56.5
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.1e-219 767.3 764 61.0
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.7e-218 762.7 768 57.0
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 6.0e-218 761.5 789 54.9
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.3e-217 760.4 820 55.4
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 4.3e-216 755.4 785 55.2
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 4.7e-215 751.9 786 55.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 6.2e-215 751.5 785 55.4
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 8.1e-215 751.1 776 55.8
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.8e-214 750.0 790 54.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 4.0e-214 748.8 787 54.6
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.5e-213 746.9 786 54.3
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.8e-213 745.0 785 54.8
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 7.6e-213 744.6 810 54.4
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.8e-212 742.3 810 54.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.8e-212 742.3 815 53.4
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 2.4e-211 739.6 815 53.3
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 4.2e-211 738.8 776 55.3
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.6e-210 736.9 780 54.9
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 2.7e-210 736.1 768 54.7
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.5e-210 735.7 784 54.3
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 4.6e-210 735.3 789 54.1
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.6e-209 731.5 750 55.6
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 6.6e-209 731.5 783 54.8
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 3.3e-208 729.2 832 52.6
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.4e-206 723.8 752 55.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.4e-206 723.8 757 55.6
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.8e-206 723.4 753 55.1
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.2e-205 720.7 792 52.5
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.7e-204 716.8 783 53.4
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 8.4e-204 714.5 779 54.0
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 8.4e-204 714.5 773 54.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.2e-203 712.6 810 51.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.2e-202 710.7 788 53.2
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.2e-202 710.7 800 51.6
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.7e-202 709.5 776 53.5
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.8e-201 706.8 832 50.8
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.3e-201 706.4 828 51.7
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 5.1e-201 705.3 775 52.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 6.7e-201 704.9 837 51.7
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.5e-200 703.7 783 56.7
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 7.4e-200 701.4 778 54.8
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 9.6e-200 701.0 764 52.7
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.1e-199 699.9 767 53.1
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 3.6e-199 699.1 783 52.2
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.8e-199 698.7 874 50.0
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 4.8e-199 698.7 827 50.5
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 6.9e-198 694.9 770 53.2
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 6.9e-198 694.9 824 51.6
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.6e-197 693.0 862 50.1
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 3.4e-197 692.6 847 50.8
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 9.9e-197 691.0 823 50.2
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.7e-196 690.3 818 52.7
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 3.8e-196 689.1 794 53.5
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 4.9e-196 688.7 823 49.9
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.9e-196 688.7 807 51.2
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.1e-195 687.6 804 50.6
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 7.9e-194 681.4 769 53.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.8e-193 680.2 777 51.2
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.7e-193 678.3 812 49.9
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 6.7e-193 678.3 797 51.1
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.9e-192 676.8 725 52.4
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 3.3e-192 676.0 779 49.9
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 4.8e-191 672.2 738 52.2
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 4.8e-191 672.2 654 56.9
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.0e-189 666.8 723 52.6
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-187 660.6 770 50.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.5e-187 659.8 654 56.1
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 4.2e-187 659.1 760 49.2
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.6e-186 657.1 783 50.2
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.6e-186 655.6 782 50.1
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.0e-185 652.9 840 48.6
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.9e-184 650.2 785 51.0
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 5.7e-184 648.7 787 49.4
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 4.8e-183 645.6 789 49.6
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 4.1e-182 642.5 814 47.7
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 5.3e-182 642.1 771 49.7
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 9.0e-182 641.3 823 48.4
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.2e-181 641.0 744 50.3
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 2.0e-181 640.2 784 50.9
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-180 637.5 763 49.9
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 3.8e-180 636.0 763 49.8
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 8.5e-180 634.8 759 49.3
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-179 634.4 770 48.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 4.2e-179 632.5 580 57.9
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.3e-179 631.3 854 46.1
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.6e-178 630.6 763 49.0
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.1e-178 630.2 692 53.9
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.7e-178 629.8 732 51.2
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 6.1e-178 628.6 761 49.5
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-177 627.5 764 48.8
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.8e-177 627.1 764 48.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.3e-177 626.7 763 49.3
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 3.0e-177 626.3 764 49.2
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 6.7e-177 625.2 778 48.6
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.3e-175 620.9 761 49.0
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 8.2e-175 618.2 772 47.8
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-171 607.8 768 48.6
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.2e-170 604.4 711 52.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.7e-167 594.0 759 48.9
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.8e-167 593.2 734 49.5
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 8.2e-167 591.7 759 47.4
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 5.2e-161 572.4 610 53.1
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 5.9e-157 558.9 713 47.5
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.6e-154 550.8 852 42.1
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 4.7e-154 549.3 835 45.3
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 4.0e-153 546.2 834 42.2
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.0e-152 543.9 435 63.2
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.4e-150 537.7 734 46.6
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.5e-147 527.7 645 48.7
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.5e-136 491.1 769 41.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.4e-136 490.0 737 42.6
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.1e-134 485.0 436 57.6
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.0e-125 454.1 486 54.5
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.3e-113 414.1 640 41.6
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 5.1e-100 369.8 463 44.1
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.3e-94 349.0 758 34.8
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.5e-91 340.9 473 40.8
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.4e-89 334.3 481 41.0
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-83 314.3 485 39.4
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-83 314.3 472 40.5
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-80 304.7 482 37.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-80 304.7 482 37.3
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.4e-80 303.9 309 52.8
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-80 303.9 433 39.0
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-78 298.5 465 40.0
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.3e-78 295.8 476 39.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.3e-76 291.2 494 38.3
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.6e-69 268.5 536 42.9
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.4e-57 228.8 196 53.1
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.1e-54 219.2 630 33.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.2e-53 215.7 385 39.5
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.9e-44 184.1 204 55.4
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.2e-32 146.0 427 35.6
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 3.8e-23 114.4 88 52.3
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.8e-20 105.5 413 29.1
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 7.0e-17 93.6 72 59.7
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.0e-15 87.4 207 31.4
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 9.5e-14 83.2 105 42.9
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 5.2e-12 77.4 65 66.2
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 3.4e-11 74.7 46 78.3
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 2.9e-10 71.6 53 58.5
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 7.8e-08 63.5 50 58.0
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 5.0e-07 60.8 73 37.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.0e-07 60.8 73 37.0
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 6.6e-07 60.5 53 45.3
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.5e-06 59.3 73 45.2
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.3e-06 57.0 53 43.4
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 9.5e-06 56.6 55 50.9


User provided reference genes

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