Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 2.8e-199 698.4 341 100.0
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.0e-169 598.6 337 84.9
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-168 596.7 337 84.6
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.5e-152 543.1 336 78.9
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 5.6e-139 498.0 336 71.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.3e-119 433.7 332 64.5
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.0e-116 422.5 332 61.1
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.5e-115 419.5 337 60.5
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 5.6e-115 418.3 337 60.8
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 6.2e-114 414.8 337 60.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 6.2e-114 414.8 333 61.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.1e-113 414.1 335 60.9
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.3e-113 411.8 327 61.2
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.0e-112 409.8 330 63.3
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.0e-108 397.5 331 59.2
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.3e-108 396.4 333 60.4
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.3e-106 390.6 339 58.1
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.3e-106 390.6 330 60.3
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.6e-106 390.2 331 61.0
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.1e-106 389.8 328 61.3
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 6.2e-106 388.3 337 59.6
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 8.1e-106 387.9 341 58.1
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.2e-104 384.0 331 58.9
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 2.0e-104 383.3 332 58.4
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.5e-104 382.1 332 58.7
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.1e-102 377.5 340 57.6
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.1e-102 377.5 257 70.4
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.4e-102 377.1 332 59.0
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.4e-102 376.3 336 55.7
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.2e-102 375.6 332 59.6
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.2e-102 375.6 334 56.0
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.1e-102 374.8 332 59.6
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 7.1e-102 374.8 334 58.4
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 9.3e-102 374.4 328 57.6
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.6e-101 373.6 338 58.0
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.6e-101 373.6 332 57.5
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.1e-101 373.2 338 58.0
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.0e-100 370.9 326 57.1
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 3.0e-100 369.4 326 57.4
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.1e-100 368.6 331 58.6
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-99 367.1 336 57.7
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 3.3e-99 365.9 334 56.6
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 7.4e-99 364.8 333 54.7
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 9.6e-99 364.4 328 56.4
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 2.1e-98 363.2 305 59.0
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.7e-98 362.5 327 53.5
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 4.8e-98 362.1 327 53.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 4.8e-98 362.1 327 53.8
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.8e-98 362.1 303 59.1
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.8e-98 362.1 327 56.6
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 6.2e-98 361.7 331 55.0
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 6.2e-98 361.7 253 66.8
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 8.1e-98 361.3 330 55.5
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.8e-97 360.1 332 56.6
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.4e-97 359.8 294 60.5
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 5.3e-97 358.6 327 53.5
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 5.3e-97 358.6 327 53.5
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 5.3e-97 358.6 303 58.4
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 6.9e-97 358.2 327 53.8
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 9.0e-97 357.8 331 55.0
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 9.0e-97 357.8 294 60.9
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.5e-96 357.1 334 53.6
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 3.4e-96 355.9 327 53.2
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 5.8e-96 355.1 331 56.8
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.3e-95 354.0 297 58.9
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.9e-95 352.8 346 54.6
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.4e-94 350.5 329 53.8
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.4e-94 350.5 301 54.5
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.9e-94 350.1 335 55.5
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 7.1e-94 348.2 302 58.3
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 9.3e-94 347.8 329 54.4
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.6e-93 347.1 301 54.5
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.6e-93 347.1 329 53.2
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.1e-93 346.7 294 59.9
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.7e-93 346.3 335 55.5
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 4.6e-93 345.5 330 53.6
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 4.6e-93 345.5 329 52.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.0e-92 344.4 334 50.9
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.8e-92 343.6 334 52.1
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.0e-92 342.8 296 57.8
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 3.0e-92 342.8 336 53.6
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.1e-91 340.9 342 52.9
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 4.3e-91 339.0 307 58.6
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 4.3e-91 339.0 307 58.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.7e-91 338.6 333 50.2
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 5.7e-91 338.6 295 61.7
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-90 337.4 338 51.8
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 3.7e-90 335.9 330 52.7
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.8e-90 335.5 340 51.2
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.1e-89 334.3 290 58.3
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.4e-89 334.0 334 50.3
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.1e-89 332.8 335 48.7
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.3e-89 332.0 333 50.8
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.3e-89 332.0 340 52.6
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.3e-89 332.0 335 48.4
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 6.9e-89 331.6 340 52.6
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.9e-89 331.6 335 52.5
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.0e-88 330.1 330 49.4
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.6e-88 329.7 335 48.4
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-88 329.3 338 52.7
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.5e-88 328.9 335 50.7
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.7e-87 327.0 336 52.1
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.9e-87 326.2 336 51.2
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 3.8e-87 325.9 278 59.4
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.1e-86 324.3 342 51.8
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 2.5e-86 323.2 367 49.9
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.3e-86 321.2 335 48.4
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-85 320.9 364 49.5
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-85 320.5 334 48.2
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 1.6e-85 320.5 287 57.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.7e-85 319.7 334 48.2
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 3.9e-84 315.8 326 51.8
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.5e-83 313.9 257 60.7
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.3e-83 312.4 338 48.5
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 5.7e-83 312.0 257 61.1
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 9.7e-83 311.2 328 49.1
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 9.7e-83 311.2 331 48.9
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.2e-82 310.1 332 48.5
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.8e-82 309.7 342 48.0
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-81 307.8 335 49.3
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.1e-81 307.8 343 48.7
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 2.4e-81 306.6 335 47.2
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.1e-81 306.2 332 48.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.0e-81 304.7 264 55.7
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.0e-80 303.5 329 50.8
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.4e-80 302.8 335 45.7
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 7.7e-80 301.6 327 47.4
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.0e-79 301.2 335 46.0
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.7e-79 300.4 335 45.7
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.9e-79 299.7 327 46.8
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.9e-78 297.0 334 45.8
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.5e-78 296.6 254 56.7
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 4.2e-78 295.8 327 48.0
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 5.5e-78 295.4 335 46.9
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 5.5e-78 295.4 357 44.8
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 5.5e-78 295.4 324 47.2
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 3.6e-77 292.7 336 46.1
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 4.6e-77 292.4 335 44.5
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 6.1e-77 292.0 256 55.1
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.0e-76 291.2 334 45.2
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.3e-76 290.0 334 45.5
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 5.7e-75 285.4 256 53.9
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 7.4e-75 285.0 330 47.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.7e-74 282.7 274 52.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 4.8e-74 282.3 259 54.1
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.1e-73 281.2 295 49.8
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 3.1e-73 279.6 253 54.5
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.6e-69 267.3 258 51.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.7e-69 266.5 243 50.6
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.5e-67 260.8 259 49.4
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 2.2e-66 256.9 248 50.8
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 3.5e-64 249.6 161 72.0
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 2.7e-61 240.0 291 46.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 8.2e-58 228.4 238 51.3
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.4e-57 227.6 159 66.7
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 5.9e-56 222.2 201 51.7
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 5.0e-55 219.2 212 46.7
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.2e-52 209.1 145 72.4
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 5.2e-52 209.1 245 45.7
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.2e-52 209.1 154 64.3
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 4.4e-51 206.1 286 44.8
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 9.1e-49 198.4 234 47.0
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.0e-44 184.9 250 41.6
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.1e-41 174.9 178 48.3
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 5.7e-35 152.5 255 34.1
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 9.8e-35 151.8 237 37.6
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 3.0e-31 140.2 128 61.7
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.1e-30 138.3 89 73.0
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 5.4e-25 119.4 97 62.9
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-24 117.5 83 69.9
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 2.0e-24 117.5 83 73.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 7.3e-22 109.0 77 63.6
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 3.1e-20 103.6 83 59.0
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.0e-19 100.9 126 39.7
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 9.5e-14 82.0 56 67.9


User provided reference genes

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