Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21936 Beta vulgaris HOM05D020742 ORTHO05D021190 4.5e-155 551.2 276 100.0
AUR62016375 Chenopodium quinoa HOM05D020742 ORTHO05D021190 1.0e-21 108.2 213 41.3
Oeu063806.2 Olea europaea HOM05D001781 ORTHO05D001711 8.3e-16 88.6 223 30.0
AUR62011557 Chenopodium quinoa HOM05D020742 ORTHO05D021190 1.2e-14 84.7 212 31.6
AUR62016376 Chenopodium quinoa HOM05D020742 ORTHO05D021190 1.6e-14 84.3 132 37.1
Ah.01g011220 Amaranthus hybridus HOM05D020742 ORTHO05D021190 5.9e-14 82.4 191 34.6
CsaV3_7G032610 Cucumis sativus L. HOM05D001781 ORTHO05D001711 1.3e-13 81.3 192 28.6
CSS0002175 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 2.2e-13 80.5 241 29.5
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.9e-13 80.1 289 25.3
Rhsim08G0216100 Rhododendron simsii HOM05D001781 ORTHO05D001711 2.9e-13 80.1 221 27.6
QL02p087754 Quercus lobata HOM05D001781 ORTHO05D001711 3.8e-13 79.7 207 27.5
MELO3C023403.2 Cucumis melo HOM05D001781 ORTHO05D001711 5.0e-13 79.3 191 27.2
AUR62011556 Chenopodium quinoa HOM05D020742 ORTHO05D021190 6.5e-13 79.0 124 46.0
Manes.11G052900 Manihot esculenta HOM05D001781 ORTHO05D001711 1.9e-12 77.4 219 29.2
ClCG09G002730 Citrullus lanatus HOM05D001781 ORTHO05D001711 3.2e-12 76.6 190 26.8
Aqoxy7G02095 Aquilegia oxysepala HOM05D001781 ORTHO05D001711 4.2e-12 76.3 242 27.7
Potri.003G061600 Populus trichocarpa HOM05D001781 ORTHO05D001711 4.2e-12 76.3 209 29.2
Actinidia15795 Actinidia chinensis HOM05D001781 ORTHO05D001711 5.5e-12 75.9 100 40.0
BraA03t13274Z Brassica rapa HOM05D001781 ORTHO05D001711 7.2e-12 75.5 211 31.3
Cfa003345 Carpinus fangiana HOM05D001781 ORTHO05D001711 9.4e-12 75.1 206 29.1
BcaC01g03632 Brassica carinata HOM05D001781 ORTHO05D001711 1.2e-11 74.7 200 31.5
Sabra03G0035700 Salix brachista HOM05D001781 ORTHO05D001711 1.6e-11 74.3 209 26.8
Nn8g39386 Nelumbo nucifera HOM05D001781 ORTHO05D001711 2.1e-11 73.9 190 30.0
Nitab4.5_0006574g0060 Nicotiana tabacum HOM05D001781 ORTHO05D001711 2.1e-11 73.9 202 32.7
Sed0027740 Sechium edule HOM05D001781 ORTHO05D001711 2.1e-11 73.9 192 28.6
BcaB04g19039 Brassica carinata HOM05D001781 ORTHO05D001711 3.6e-11 73.2 208 30.3
Sc18g0000720 Simmondsia chinensis HOM05D001781 ORTHO05D001711 3.6e-11 73.2 216 25.0
vmacro18965 Vaccinium macrocarpon HOM05D001781 ORTHO05D001711 3.6e-11 73.2 234 26.9
FAN26G1253 Fragaria x ananassa HOM05D001781 ORTHO05D001711 4.7e-11 72.8 276 25.7
BcaB02g09431 Brassica carinata HOM05D001781 ORTHO05D001711 6.1e-11 72.4 241 27.0
A03p41210 Brassica napus HOM05D001781 ORTHO05D001711 6.1e-11 72.4 211 30.3
Manes.14G130400 Manihot esculenta HOM05D001781 ORTHO05D001711 6.1e-11 72.4 208 26.9
Nitab4.5_0002257g0050 Nicotiana tabacum HOM05D001781 ORTHO05D001711 6.1e-11 72.4 211 31.8
GSVIVG01017255001 Vitis vinifera HOM05D001781 ORTHO05D001711 6.1e-11 72.4 101 40.6
CiPaw.03G241600 Carya illinoinensis HOM05D001781 ORTHO05D001711 1.0e-10 71.6 199 28.1
BolC3t17324H Brassica oleracea HOM05D001781 ORTHO05D001711 1.4e-10 71.2 212 30.7
Nn2g11963 Nelumbo nucifera HOM05D001781 ORTHO05D001711 1.4e-10 71.2 98 37.8
TAR625G1385 Trochodendron aralioides HOM05D001781 ORTHO05D001711 1.4e-10 71.2 271 27.3
Aa31LG8G6110 Aethionema arabicum HOM05D001781 ORTHO05D001711 1.8e-10 70.9 222 27.5
AL3G32760 Arabidopsis lyrata HOM05D001781 ORTHO05D001711 1.8e-10 70.9 201 28.9
Potri.009G130600 Populus trichocarpa HOM05D001781 ORTHO05D001711 1.8e-10 70.9 204 27.5
Sed0005130 Sechium edule HOM05D001781 ORTHO05D001711 1.8e-10 70.9 185 27.6
Sc08g0006760 Simmondsia chinensis HOM05D001781 ORTHO05D001711 1.8e-10 70.9 285 27.4
TWI34G1451 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 1.8e-10 70.9 204 26.5
Eucgr.C04180 Eucalyptus grandis HOM05D001781 ORTHO05D001711 2.3e-10 70.5 225 28.0
FvH4_1g03610 Fragaria vesca HOM05D001781 ORTHO05D001711 2.3e-10 70.5 276 25.7
FAN19G3215 Fragaria x ananassa HOM05D001781 ORTHO05D001711 2.3e-10 70.5 276 25.7
CARHR094760 Cardamine hirsuta HOM05D001781 ORTHO05D001711 3.0e-10 70.1 197 28.9
Duzib168G2385 Durio zibethinus HOM05D001781 ORTHO05D001711 3.0e-10 70.1 211 28.9
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.0e-10 70.1 274 24.1
AUR62011086 Chenopodium quinoa HOM05D001781 ORTHO05D001711 4.0e-10 69.7 232 27.2
AT3G19360 Arabidopsis thaliana HOM05D001781 ORTHO05D001711 5.2e-10 69.3 201 29.4
C03p50300 Brassica napus HOM05D001781 ORTHO05D001711 1.2e-09 68.2 220 29.5
Carub.0003s1918 Capsella rubella HOM05D001781 ORTHO05D001711 1.2e-09 68.2 205 28.8
Solyc03g116410.3 Solanum lycopersicum HOM05D001781 ORTHO05D001711 1.2e-09 68.2 191 27.7
Sabra09G0101100 Salix brachista HOM05D001781 ORTHO05D001711 1.5e-09 67.8 108 35.2
ATR1156G002 Amborella trichopoda HOM05D001781 ORTHO05D001711 2.0e-09 67.4 203 27.6
ClCG11G002860 Citrullus lanatus HOM05D001781 ORTHO05D001711 2.0e-09 67.4 191 27.7
Migut.I00800 Erythranthe guttata HOM05D001781 ORTHO05D001711 2.6e-09 67.0 227 27.3
A05p10310 Brassica napus HOM05D001781 ORTHO05D001711 3.4e-09 66.6 234 26.9
Ciclev10008851m.g Citrus clementina HOM05D001781 ORTHO05D001711 3.4e-09 66.6 249 26.5
Thhalv10020894m.g Eutrema salsugineum HOM05D001781 ORTHO05D001711 3.4e-09 66.6 197 28.9
Gohir.A07G034784 Gossypium hirsutum HOM05D001781 ORTHO05D001711 4.4e-09 66.2 205 26.3
Thecc.09G122900 Theobroma cacao HOM05D001781 ORTHO05D001711 4.4e-09 66.2 206 25.2
TWI63G0260 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 4.4e-09 66.2 195 26.7
CANSAT11G0594 Cannabis sativa HOM05D001781 ORTHO05D001711 5.7e-09 65.9 209 27.3
Atru.chr6.2116 Acer truncatum HOM05D001781 ORTHO05D001711 7.5e-09 65.5 203 25.1
EL10Ac5g12613 Beta vulgaris HOM05D001781 ORTHO05D001711 7.5e-09 65.5 297 26.3
BraA05t19969Z Brassica rapa HOM05D001781 ORTHO05D001711 1.3e-08 64.7 205 26.8
Peaxi162Scf00274g00839 Petunia axillaris HOM05D001781 ORTHO05D001711 1.3e-08 64.7 227 25.6
EL10Ac3g05051 Beta vulgaris HOM05D001781 ORTHO05D001711 1.7e-08 64.3 268 25.4
BraA01t03610Z Brassica rapa HOM05D001781 ORTHO05D001711 1.7e-08 64.3 205 28.3
Sc13g0010950 Simmondsia chinensis HOM05D001781 ORTHO05D001711 1.7e-08 64.3 276 23.6
BcaB04g20709 Brassica carinata HOM05D001781 ORTHO05D001711 2.2e-08 63.9 199 27.1
A01p35290 Brassica napus HOM05D001781 ORTHO05D001711 2.2e-08 63.9 197 27.9
Lj4A461T9 Lonicera japonica HOM05D001781 ORTHO05D001711 2.2e-08 63.9 211 26.1
Peaxi162Scf00591g00511 Petunia axillaris HOM05D001781 ORTHO05D001711 2.8e-08 63.5 195 24.6
BcaC09g48886 Brassica carinata HOM05D001781 ORTHO05D001711 3.7e-08 63.2 197 27.9
C01p44780 Brassica napus HOM05D001781 ORTHO05D001711 3.7e-08 63.2 197 27.4
BolC1t04444H Brassica oleracea HOM05D001781 ORTHO05D001711 3.7e-08 63.2 197 27.9
Duzib187G1560 Durio zibethinus HOM05D001781 ORTHO05D001711 3.7e-08 63.2 211 27.0
Psat4g040320 Pisum sativum HOM05D001781 ORTHO05D001711 3.7e-08 63.2 245 24.5
RcHm_v2.0_Chr2g0089141 Rosa chinensis HOM05D001781 ORTHO05D001711 3.7e-08 63.2 277 23.5
SHI22515 Sapria himalayana HOM05D001781 ORTHO05D001711 3.7e-08 63.2 207 25.6
BcaC02g11648 Brassica carinata HOM05D001781 ORTHO05D001711 4.8e-08 62.8 231 27.7
Hma1.2p1_0018F.1_g012670 Hydrangea macrophylla HOM05D001781 ORTHO05D001711 4.8e-08 62.8 201 26.4
Rhsim01G0076800 Rhododendron simsii HOM05D001781 ORTHO05D001711 4.8e-08 62.8 257 24.1
Sp3g17420 Schrenkiella parvula HOM05D001781 ORTHO05D001711 4.8e-08 62.8 202 29.7
Prupe.7G239500 Prunus persica HOM05D001781 ORTHO05D001711 6.3e-08 62.4 214 27.6
COL.COLO4_05760 Corchorus olitorius HOM05D001781 ORTHO05D001711 8.3e-08 62.0 211 26.1
CSS0022836 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 1.1e-07 61.6 257 24.9
CSS0038934 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 1.1e-07 61.6 257 24.9
Gohir.D07G038700 Gossypium hirsutum HOM05D001781 ORTHO05D001711 1.1e-07 61.6 207 24.6
MD15G1175900 Malus domestica HOM05D001781 ORTHO05D001711 1.1e-07 61.6 201 26.4
Gorai.001G040700 Gossypium raimondii HOM05D001781 ORTHO05D001711 1.4e-07 61.2 210 25.7
CsaV3_2G002700 Cucumis sativus L. HOM05D001781 ORTHO05D001711 1.8e-07 60.8 194 27.8
Ah.14g080640 Amaranthus hybridus HOM05D001781 ORTHO05D001711 2.4e-07 60.5 198 24.7
arahy.Tifrunner.gnm1.ann1.JJB9SI Arachis hypogaea HOM05D001781 ORTHO05D001711 2.4e-07 60.5 217 24.4
Medtr3g050390 Medicago truncatula HOM05D001781 ORTHO05D001711 2.4e-07 60.5 195 27.7
SalBow1G3291 Salvia bowleyana HOM05D001781 ORTHO05D001711 2.4e-07 60.5 233 27.0
Migut.B01754 Erythranthe guttata HOM05D001781 ORTHO05D001711 3.1e-07 60.1 220 24.5
Psat4g041760 Pisum sativum HOM05D001781 ORTHO05D001711 3.1e-07 60.1 251 24.7
SalBow3G3071 Salvia bowleyana HOM05D001781 ORTHO05D001711 3.1e-07 60.1 286 23.8
Hund09807 Selenicereus undatus HOM05D001781 ORTHO05D001711 3.1e-07 60.1 321 22.7
PGSC0003DMG400038576 Solanum tuberosum HOM05D001781 ORTHO05D001711 3.1e-07 60.1 132 30.3
THA.LOC104826540 Tarenaya hassleriana HOM05D001781 ORTHO05D001711 3.1e-07 60.1 97 32.0
MD02G1035700 Malus domestica HOM05D001781 ORTHO05D001711 4.1e-07 59.7 255 24.7
Nitab4.5_0000021g0790 Nicotiana tabacum HOM05D001781 ORTHO05D001711 4.1e-07 59.7 287 23.7
Sed0007229 Sechium edule HOM05D001781 ORTHO05D001711 4.1e-07 59.7 187 27.3
Hund21486 Selenicereus undatus HOM05D001781 ORTHO05D001711 4.1e-07 59.7 271 25.1
Solyc03g116420.1 Solanum lycopersicum HOM05D001781 ORTHO05D001711 4.1e-07 59.7 193 27.5
THA.LOC104809002 Tarenaya hassleriana HOM05D001781 ORTHO05D001711 4.1e-07 59.7 100 35.0
AUR62002086 Chenopodium quinoa HOM05D001781 ORTHO05D001711 5.4e-07 59.3 264 23.9
PGSC0003DMG400000604 Solanum tuberosum HOM05D001781 ORTHO05D001711 5.4e-07 59.3 197 25.9
AUR62028204 Chenopodium quinoa HOM05D001781 ORTHO05D001711 7.0e-07 58.9 264 23.1
Lj4g0027268 Lotus japonicus HOM05D001781 ORTHO05D001711 7.0e-07 58.9 308 24.4
Psat4g041600 Pisum sativum HOM05D001781 ORTHO05D001711 7.0e-07 58.9 223 23.8
arahy.Tifrunner.gnm1.ann1.B60469 Arachis hypogaea HOM05D001781 ORTHO05D001711 9.1e-07 58.5 217 23.0
Dinv36549 Davidia involucrata HOM05D001781 ORTHO05D001711 9.1e-07 58.5 205 23.4
Lalb_Chr12g0197811 Lupinus albus HOM05D001781 ORTHO05D001711 9.1e-07 58.5 216 24.5
Nitab4.5_0004188g0030 Nicotiana tabacum HOM05D001781 ORTHO05D001711 9.1e-07 58.5 234 25.6
Nitab4.5_0005411g0020 Nicotiana tabacum HOM05D001781 ORTHO05D001711 9.1e-07 58.5 234 25.6
CDE04G2249 Ceratophyllum demersum HOM05D001781 ORTHO05D001711 1.2e-06 58.2 201 25.9
DCAR_025485 Daucus carota HOM05D001781 ORTHO05D001711 1.2e-06 58.2 100 33.0
Lsat_1_v5_gn_8_58880 Lactuca sativa HOM05D001781 ORTHO05D001711 1.2e-06 58.2 200 24.5
Solyc11g070070.3 Solanum lycopersicum HOM05D001781 ORTHO05D001711 1.2e-06 58.2 248 26.2
COL.COLO4_12901 Corchorus olitorius HOM05D001781 ORTHO05D001711 1.6e-06 57.8 100 31.0
Thhalv10016994m.g Eutrema salsugineum HOM05D001781 ORTHO05D001711 1.6e-06 57.8 252 22.2
PGSC0003DMG400026471 Solanum tuberosum HOM05D001781 ORTHO05D001711 1.6e-06 57.8 220 22.7
Hma1.2p1_0665F.1_g199160 Hydrangea macrophylla HOM05D001781 ORTHO05D001711 2.0e-06 57.4 197 25.9
MD06G1036400 Malus domestica HOM05D001781 ORTHO05D001711 2.0e-06 57.4 228 25.0
PSO170G3589 Papaver somniferum HOM05D001781 ORTHO05D001711 2.0e-06 57.4 302 25.2
PSO455G0032 Papaver somniferum HOM05D001781 ORTHO05D001711 2.0e-06 57.4 298 24.5
Cc06_g08800 Coffea canephora HOM05D001781 ORTHO05D001711 2.7e-06 57.0 250 22.4
MELO3C004524.2 Cucumis melo HOM05D001781 ORTHO05D001711 2.7e-06 57.0 203 25.6
Oeu006925.1 Olea europaea HOM05D001781 ORTHO05D001711 2.7e-06 57.0 279 25.8
Psat4g041560 Pisum sativum HOM05D001781 ORTHO05D001711 2.7e-06 57.0 236 24.6
CDE12G0789 Ceratophyllum demersum HOM05D001781 ORTHO05D001711 3.5e-06 56.6 105 35.2
Sopen11g028750 Solanum pennellii HOM05D001781 ORTHO05D001711 3.5e-06 56.6 248 25.8
vmacro20596 Vaccinium macrocarpon HOM05D001781 ORTHO05D001711 3.5e-06 56.6 230 23.5
CAN.G1131.35 Capsicum annuum HOM05D001781 ORTHO05D001711 4.5e-06 56.2 221 23.5
Os08g0159800 Oryza sativa ssp. japonica HOM05D001781 ORTHO05D001711 4.5e-06 56.2 127 29.1
PGSC0003DMG400025515 Solanum tuberosum HOM05D001781 ORTHO05D001711 4.5e-06 56.2 248 25.8
Atru.chr7.1195 Acer truncatum HOM05D001781 ORTHO05D001711 5.9e-06 55.8 109 36.7
TAR636G2048 Trochodendron aralioides HOM05D001781 ORTHO05D001711 5.9e-06 55.8 98 38.8
Migut.K00116 Erythranthe guttata HOM05D001781 ORTHO05D001711 7.7e-06 55.5 250 25.6
Solyc06g072720.3 Solanum lycopersicum HOM05D001781 ORTHO05D001711 7.7e-06 55.5 283 23.3
Sopen06g029090 Solanum pennellii HOM05D001781 ORTHO05D001711 7.7e-06 55.5 283 23.3
PGSC0003DMG400026937 Solanum tuberosum HOM05D001781 ORTHO05D001711 7.7e-06 55.5 283 23.3


User provided reference genes

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