Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 2.1e-149 532.3 262 100.0
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 9.3e-102 374.0 233 77.3
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.2e-101 373.6 260 71.2
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.5e-101 372.1 242 74.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.1e-97 360.5 233 74.7
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.6e-93 346.7 238 68.5
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.7e-77 292.7 245 59.6
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 5.2e-76 288.5 242 60.3
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.5e-75 287.0 240 59.6
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.3e-74 283.9 237 60.8
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 2.8e-74 282.7 208 64.4
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 4.1e-73 278.9 242 59.1
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 9.1e-73 277.7 242 58.7
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 5.0e-71 271.9 239 56.1
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.1e-70 270.8 256 53.1
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.5e-70 270.4 244 54.9
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 4.2e-70 268.9 258 53.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 9.4e-70 267.7 240 55.0
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.2e-69 267.3 254 51.6
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.7e-69 266.2 252 52.8
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 3.6e-69 265.8 254 51.6
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 8.0e-69 264.6 257 51.0
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.0e-68 264.2 240 55.0
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.4e-68 263.8 238 55.0
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.0e-68 262.7 256 52.7
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 4.0e-68 262.3 239 54.4
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 4.4e-67 258.8 243 56.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 9.7e-67 257.7 232 54.7
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.7e-66 255.8 241 53.5
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.8e-66 255.4 243 53.1
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 8.3e-66 254.6 231 54.5
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.1e-65 254.2 239 55.2
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.1e-65 254.2 236 53.8
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.1e-65 254.2 238 55.0
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.1e-65 254.2 238 53.4
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.4e-65 253.1 231 55.4
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 7.0e-65 251.5 242 50.4
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 7.0e-65 251.5 231 56.3
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 2.0e-64 250.0 230 53.5
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.7e-64 249.6 244 52.5
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.5e-64 249.2 252 52.4
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.0e-63 247.7 253 51.0
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.0e-63 247.7 258 50.4
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.2e-63 246.5 238 52.5
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.9e-63 246.1 231 52.4
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.9e-63 246.1 231 52.4
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.9e-63 246.1 245 50.2
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 3.8e-63 245.7 241 49.4
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 3.8e-63 245.7 239 51.5
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 5.0e-63 245.4 239 51.5
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 6.5e-63 245.0 239 50.6
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 8.5e-63 244.6 271 47.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 8.5e-63 244.6 242 50.8
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.1e-62 244.2 232 51.7
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.5e-62 243.8 244 52.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.5e-62 243.8 231 53.7
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.5e-62 243.8 238 50.0
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.9e-62 243.4 238 52.1
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.5e-62 243.0 234 51.3
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 4.2e-62 242.3 190 63.2
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 5.5e-62 241.9 231 54.1
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 7.2e-62 241.5 238 51.3
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 9.4e-62 241.1 227 53.3
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.2e-61 240.7 231 54.5
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.1e-61 240.0 235 50.2
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.7e-61 239.6 241 52.3
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 3.6e-61 239.2 240 52.1
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.7e-61 238.8 213 57.7
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.7e-61 238.8 253 50.2
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.0e-60 237.7 231 51.5
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 6.8e-60 235.0 249 47.0
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 6.8e-60 235.0 242 49.2
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.2e-59 234.2 241 48.5
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.5e-59 233.8 222 50.9
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.0e-59 233.4 236 48.3
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.6e-59 233.0 256 49.6
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 9.8e-59 231.1 257 51.0
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.3e-58 230.7 239 50.2
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.3e-58 230.7 247 49.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.3e-58 230.7 230 48.7
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 2.2e-58 229.9 254 48.0
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 2.8e-58 229.6 259 44.0
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 3.7e-58 229.2 226 53.1
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 4.8e-58 228.8 254 50.4
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 4.8e-58 228.8 241 47.7
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 6.3e-58 228.4 236 46.6
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 8.3e-58 228.0 231 50.6
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 8.3e-58 228.0 259 43.6
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 3.1e-57 226.1 255 48.2
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 3.1e-57 226.1 255 48.2
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.0e-56 223.4 230 50.0
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 2.0e-56 223.4 259 47.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 2.7e-56 223.0 247 49.0
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.7e-56 221.5 203 55.7
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.7e-56 221.5 203 55.7
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.0e-55 221.1 247 48.6
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.0e-55 221.1 232 48.7
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.7e-55 220.3 233 47.2
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 2.9e-55 219.5 247 47.0
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 3.8e-55 219.2 248 48.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 6.6e-55 218.4 247 48.2
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 6.6e-55 218.4 237 48.5
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.5e-54 217.2 211 53.6
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 3.3e-54 216.1 245 46.5
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 3.3e-54 216.1 236 47.5
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.5e-54 215.3 262 45.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.2e-53 214.2 259 45.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.1e-53 213.4 262 45.0
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.6e-53 212.6 259 45.6
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 6.1e-53 211.8 243 46.5
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 8.0e-53 211.5 241 46.9
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.4e-52 210.7 241 49.0
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.8e-52 210.3 247 45.7
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.8e-52 210.3 202 56.4
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.0e-52 209.1 220 49.5
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 8.9e-52 208.0 182 58.8
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.6e-51 206.5 223 49.3
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.3e-50 204.1 231 46.3
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.2e-50 203.4 212 51.9
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.2e-48 197.6 239 41.8
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.5e-48 196.1 239 44.8
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.3e-47 193.4 177 56.5
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.3e-47 193.4 177 56.5
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 3.9e-47 192.6 242 42.6
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 4.3e-46 189.1 232 42.2
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 5.6e-46 188.7 165 58.8
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.7e-45 185.7 230 43.0
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.1e-45 185.3 206 48.1
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 3.1e-44 183.0 217 47.9
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 6.8e-44 181.8 211 46.0
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 4.4e-43 179.1 205 49.3
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.9e-41 173.7 188 47.3
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 2.4e-41 173.3 250 38.0
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 6.0e-40 168.7 258 36.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 3.9e-39 166.0 233 41.2
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 6.4e-34 148.7 169 49.7
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.4e-33 147.5 153 53.6
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 2.8e-29 133.3 160 41.9
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.7e-26 124.0 96 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 2.4e-25 120.2 186 39.2
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 2.1e-24 117.1 136 47.1
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.3e-23 114.4 87 64.4
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.9e-22 110.5 82 64.6
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.3e-22 109.8 104 47.1
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.2e-21 107.8 87 60.9
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.4e-20 104.4 252 30.2
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 5.8e-19 99.0 143 42.7
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 4.9e-18 95.9 121 41.3
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-17 94.4 77 57.1
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 3.5e-16 89.7 86 55.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.2e-08 64.7 67 52.2


User provided reference genes

Program Settings