Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 8.0e-48 193.4 93 100.0
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 4.1e-28 127.9 92 69.6
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 3.5e-27 124.8 79 73.4
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 5.8e-14 80.9 86 46.5
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 7.1e-12 73.9 75 46.7
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 9.3e-12 73.6 85 47.1
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.2e-11 73.2 79 48.1
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.1e-11 72.4 80 43.8
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 2.1e-11 72.4 90 46.7
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 3.5e-11 71.6 79 48.1
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 4.6e-11 71.2 83 42.2
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 7.8e-11 70.5 85 44.7
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.0e-10 70.1 80 42.5
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 3.0e-10 68.6 81 48.1
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 6.6e-10 67.4 86 39.5
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.9e-09 65.9 96 38.5
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.9e-09 65.9 86 41.9
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.5e-09 65.5 82 41.5
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 3.3e-09 65.1 86 44.2
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.6e-09 64.3 86 40.7
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.3e-09 63.9 87 41.4
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 9.6e-09 63.5 83 43.4
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 9.6e-09 63.5 87 44.8
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.6e-08 62.8 80 42.5
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.6e-08 62.8 78 42.3
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.1e-08 62.4 85 43.5
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.1e-08 62.4 92 39.1
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.1e-08 62.4 92 39.1
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.1e-08 62.4 92 39.1
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 2.8e-08 62.0 92 39.1
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 2.8e-08 62.0 71 42.3
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.8e-08 62.0 96 41.7
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.6e-08 61.6 93 36.6
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.8e-08 61.2 83 42.2
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 4.8e-08 61.2 97 36.1
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 4.8e-08 61.2 78 46.2
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 4.8e-08 61.2 71 43.7
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 6.2e-08 60.8 82 41.5
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 8.1e-08 60.5 71 43.7
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.1e-07 60.1 75 40.0
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.1e-07 60.1 75 38.7
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.1e-07 60.1 88 38.6
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.4e-07 59.7 82 39.0
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.4e-07 59.7 82 40.2
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.8e-07 59.3 88 39.8
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 1.8e-07 59.3 77 40.3
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.8e-07 59.3 85 42.4
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 2.4e-07 58.9 75 42.7
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 2.4e-07 58.9 73 38.4
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 2.4e-07 58.9 86 37.2
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 4.0e-07 58.2 86 37.2
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 4.0e-07 58.2 71 40.8
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 4.0e-07 58.2 78 38.5
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 5.3e-07 57.8 73 38.4
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 5.3e-07 57.8 85 44.7
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 5.3e-07 57.8 80 46.2
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 5.3e-07 57.8 60 45.0
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 6.9e-07 57.4 85 45.9
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.9e-07 57.4 82 39.0
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 6.9e-07 57.4 86 39.5
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 9.0e-07 57.0 93 34.4
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 9.0e-07 57.0 80 36.2
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 9.0e-07 57.0 77 39.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 9.0e-07 57.0 80 35.0
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.2e-06 56.6 83 39.8
CSS0039349 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 1.2e-06 56.6 52 44.2
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.2e-06 56.6 81 35.8
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 1.2e-06 56.6 86 36.0
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 1.2e-06 56.6 81 42.0
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.2e-06 56.6 76 38.2
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.2e-06 56.6 81 39.5
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 1.5e-06 56.2 79 45.6
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.0e-06 55.8 77 40.3
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 2.0e-06 55.8 84 44.0
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 2.0e-06 55.8 92 37.0
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.0e-06 55.8 82 40.2
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 2.6e-06 55.5 75 36.0
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 4.4e-06 54.7 85 38.8
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 4.4e-06 54.7 84 35.7
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 4.4e-06 54.7 66 40.9
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 4.4e-06 54.7 78 43.6
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 4.4e-06 54.7 88 35.2
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 5.8e-06 54.3 77 35.1
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 5.8e-06 54.3 85 38.8
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 5.8e-06 54.3 97 34.0
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 7.6e-06 53.9 77 40.3
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 7.6e-06 53.9 77 40.3
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 7.6e-06 53.9 83 39.8
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 7.6e-06 53.9 73 38.4
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 9.9e-06 53.5 77 40.3
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 9.9e-06 53.5 85 35.3
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 9.9e-06 53.5 93 37.6


User provided reference genes

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